Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq31237 192 7e-44 seq32043 143 3e-29 seq31824 132 5e-26 seq2604 107 2e-18 >seq31237 Length=28651 Score = 192 bits (212), Expect = 7e-44 Identities = 305/432 (71%), Gaps = 4/432 (1%) Strand=Plus/Plus Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 ||| || || ||||||||||| ||||| | ||| | |||||||| | ||||| | Sbjct 16128 TAAGCCTGGGCATTCATTAGGGCACATTAGACTCCATTTTTCATCATTCTCAACTCTTCT 16187 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 |||||| ||| |||||||| | || |||||||||||||| | ||| || || Sbjct 16188 CATAAACTCATCAGGTATCCACAACGCGTAAAATAAATCCCTAGCGCGAGTTTCCTCTTT 16247 Query 48272 GCCACTATTCCTTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 ||| |||| | | | ||| |||||| || | ||||| | |||||| |||||||||| Sbjct 16248 ACCAGAATTCTTCCTCAATTCTAAGAAA-TCAAAAATATCCGGATGCCAAGGTTCTAAAT 16306 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | || | |||| |||| || || ||||||||||| | ||||||||| ||||| | Sbjct 16307 AAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCTTGATCAACATATCTGGCTGTATTAT 16366 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | ||||| | | |||||| || | ||||||||||| ||| || ||||| | ||| || | Sbjct 16367 TGTAAACGCGAAGCATTGGTACGAGACCATTTGATACACCGTTAGTTCCAGCAATGTAGC 16426 Query 48451 TTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATT 48509 | ||||||| || | ||| || || ||| || || || || ||| |||||| Sbjct 16427 TATTTGTAGCTCTGATGCAATGAATGTGTAA-ACCGATTCCTCCGGCTGATTTGGATATT 16485 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | |||||| | | | | || | | | || ||||| ||||| || ||| |||| || Sbjct 16486 AAAGCACATCTTGTCAAAGTGTGAAATATACCTTCAATACTGTCTTCTTCCATAGCTATA 16545 Query 48570 AGAAAACAACTA 48581 || || |||||| Sbjct 16546 AGGAAGCAACTA 16557 Score = 125 bits (138), Expect = 8e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||||| | ||||||| || ||| | | ||||||||| |||||||| ||||| | || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 |||| || | || || || || |||||| |||| || ||||| ||| ||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || |||||||| ||||||||||||| |||||| | ||| ||||| || || |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAA 48787 || | ||| || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 48921 AATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCA 48980 ||| ||| ||||||||||||||| | ||| |||| | ||||| ||| |||||| | || Sbjct 17131 AATTTTTCTTTTGTTTCTTTATGTAAATTGGATACTGCTATTCGAGCCGCTAATGTTGCG 17190 Query 48981 TAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCT 49040 ||||| ||||||| || || || | || |||||||| ||||| |||| | |||| Sbjct 17191 TAATCCGGATGAACAGTGGTCATTGAAGCAGCGATTTCTGCAGCTAAATTATCCAGTTCT 17250 Query 49041 TTAGTAGTTACACCTGTATATATTCCTTGAATAACTTT 49078 || || ||||| | | ||| ||| | || ||||| Sbjct 17251 ACCGTTGTAACACCGGGAAATAAGCCTCGTATCACTTT 17288 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 ||||||| ||||||||||| | | || | ||| | || || | || ||||||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | | |||| ||||||||||||||| ||||||||||| ||||| | |||||| | Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | || || |||||||| ||||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAA 14748 >seq32043 Length=59240 Score = 143 bits (158), Expect = 3e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| ||||||||||||| || |||||||||||||| | ||||||||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTTTA 34448 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||| | ||| || |||| ||| || || ||||| || || ||||| || Sbjct 34449 AGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACGCG 34508 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 | | |||||||||| || |||||| | || | ||||| ||| |||||||| || Sbjct 34509 ATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTGCT 34568 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||| ||||| ||||| || || |||| ||| |||||| Sbjct 34569 TTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGA 34610 Score = 143 bits (158), Expect = 3e-29 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 || ||| | | |||||| | || | ||| ||||||||||| ||||| |||||||| | | Sbjct 34690 CGTTCAACAGGATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACA 34749 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 || || || | ||||| |||||||| ||| |||| || || | | |||||||| | Sbjct 34750 TTCTCAATGGTGATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGA 34809 Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392 | || | ||||| | ||||||||| || || ||||| |||||||||||||||||| Sbjct 34810 AAGAAACGCTCGACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAA 34869 Query 19393 ACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 |||||| |||||| ||| |||| || ||||| Sbjct 34870 ACATGTGAAATAAACTGTCTTTC--CTCAGGTT 34900 >seq31824 Length=40797 Score = 132 bits (146), Expect = 5e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 ||||||||||| || || || |||||||| || ||||| || |||| ||| ||||| Sbjct 10858 ATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTTAGCCAAAATATC 10917 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 | ||||| |||||||||||| || ||||| || |||||||| || | | |||||| Sbjct 10918 GCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCGATAATTCTTTCC 10977 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||| | |||||| | || |||||||||| ||||| || || ||| | || ||| Sbjct 10978 CCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTGCTTTCCTCTTCACA 11037 Query 19177 CATGGCATTGTCTCTATAGAATTAAATA 19204 || ||||| || || |||| ||| |||| Sbjct 11038 CAAGGCATAGTTTCAATAGCATTGAATA 11065 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| || | ||||||||||| || |||||||| ||||| | ||| ||||| | Sbjct 11161 ATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGT 11220 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || ||||||||||||||| |||| ||||| | ||||| ||||| | | || | ||| Sbjct 11221 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC 11280 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 ||| | |||||| || || || || ||| ||| || |||||||| || || ||| ||| Sbjct 11281 GACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAAT 11340 Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATTCCAATC 19439 || | | |||| |||| ||| | | | |||||| Sbjct 11341 GAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATC 11376 >seq2604 Length=35699 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 |||||||||||||| ||||||||||| | |||||| | | || | ||| ||||||| | Sbjct 25780 CTAAATATTTTTTTGGTTTCTTTATGCAAATTAGAAACGGCAATACGAGCGGCTAATACA 25721 Query 48978 GCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTAA 49036 |||||||| ||||| ||||| ||| | | | |||| ||||| | ||||||| Sbjct 25720 GCATAATCAGGATGCCGAGTTGT-CATCGAAGCCGCAGTTTCAGCTGCGAGATTATCTAA 25662 Query 49037 TTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTAT 49087 ||| ||||||| || || | | ||| ||| ||||||||||||| || || Sbjct 25661 TTCCATAGTAGTGACGCCAGGAAATAAACCTCGAATAACTTTCATCGCAAT 25611 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 48612 AATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATA 48671 |||||||| ||||| |||||| | || || |||||||| || ||||| ||||||||| Sbjct 26261 AATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGGTTTCAATA 26202 Query 48672 ACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 | | ||| || || || | || || || | || || ||||| ||||||| ||| || Sbjct 26201 GCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATATGTTGTGG 26143 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 | ||| || | || ||||||||||| ||||| || || ||||| || Sbjct 26142 CCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 47303 TTTTAAAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATAT 47362 ||| |||| | ||| |||| | ||||||||||| |||| || | | | | || || Sbjct 27983 TTTCAAAAAAAGAGAATTACC----TGAAATTCTCCGGATAAAACCCGCCTGGTGTACAT 27928 Query 47363 ATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGT 47422 ||| ||||| ||||| | |||||| |||||||| |||||||| || || || || || Sbjct 27927 GTTAGAAGTATACGGTTCAAAAGATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGT 27868 Query 47423 AGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCAT 47460 |||||| | ||||| || |||| | ||||||| |||| Sbjct 27867 AGGCATAGGTGCAA-GAAGAAGCGAGTTTCTTAAACCAT 27830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 47903 AGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGAT 47962 || ||| |||| ||| | |||||| | ||||||| ||| ||||||| || ||| || Sbjct 27170 AGTTACTTCATCGGGAGCACTATATTCCACGATTTCAGTACACAGATTACTACTTTTAAT 27111 Query 47963 AGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGG 48022 || || |||||||| |||||| | ||||||| || || || | |||| |||| Sbjct 27110 GGTTCCTAAATTTTGTTGATTAGATTTTCTATTACATGAATCTTTATACAACATATAAGG 27051 Query 48023 TGTTCCAGTTTCTATCTGAGATTC 48046 ||||||||||| || || || || Sbjct 27050 CGTTCCAGTTTCAATTTGCGAGTC 27027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561878876421720