Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq32043 132 6e-26 seq31824 113 5e-20 >seq32043 Length=59240 Score = 132 bits (146), Expect = 6e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| ||||||||||||| || ||||| || |||||||| |||||||||| Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 ||| ||||||||| || || ||| |||| ||| ||||| ||||| || || ||||| | Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | | | | | || ||||| | | | | ||||| ||||| | | |||||||| Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 37378 CCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | ||| ||||||||| || ||||| || || || || ||||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAA 34612 Score = 120 bits (132), Expect = 4e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| || |||||||| | |||||||||||| || || || | ||| ||||| | Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 ||||| || || || ||| | ||||| |||| | ||| || || | ||| || | || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 ||| |||||||| || || ||||| ||||||||| || || | ||||| | || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 37619 AAAATGTCTTTCATCA 37634 ||| |||||||| ||| Sbjct 34881 AAACTGTCTTTCCTCA 34896 >seq31824 Length=40797 Score = 113 bits (124), Expect = 5e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| ||||||||||| || || || || ||||| | ||||| || | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| ||||||||| ||||||||||||||| ||||| || |||||||||| Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 37318 CTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTG 37377 | | || | | || || || | | | | ||| | |||||||| | ||| |||| Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 37378 CCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 | || || ||||| || |||||||| || || || Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592074520216920