Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20950 104 2e-17 seq11882 102 6e-17 seq23131 84.2 2e-11 >seq20950 Length=58994 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | || |||||||| || |||||| |||||||||||||| Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| |||| |||| ||| || || || || |||| ||| || ||||| | ||| Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||| || ||| || | | | || |||| ||| || Sbjct 36845 ATGCCTTCTTTGTCCTGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 36786 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || |||||||| ||||| |||||||| Sbjct 36785 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||||| ||||||||||| || || | | ||| | || ||| Sbjct 38543 ACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCTTAAAGTACGACCATCTTCC 38484 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || || || || || || || | || | || || ||||| | Sbjct 38483 AATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGGGATACCTTCTTTGTCTTGA 38424 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | || || | || || || | ||||| ||||| Sbjct 38423 ATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGACTTCTAATGTAATTGTTTTA 38364 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || ||||| ||||| Sbjct 38363 CCAGTCAACGTTTTCACGAAAATTTGCAT 38335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || || ||||| || ||| || ||||||||||| |||||| | |||| | Sbjct 38321 CGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTCAATGTTCGGCCA 38262 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || ||||| || || || | ||| |||||||| | |||| ||||| ||| Sbjct 38261 TCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGAATACCCTCTTTG 38202 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || |||||| | | | || || | || || || | ||||| Sbjct 38201 TCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACTTCTAGAGTAATA 38142 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || | ||||||||| ||||| ||||| Sbjct 38141 GTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 >seq11882 Length=45137 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||||||||||||||| || |||| | | | || |||||||| || ||||| || | Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || |||||||||| |||| || || || || ||| || ||||||||| Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| | || || || | || || ||||| ||||| | |||||||| | Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 48757 AAATCTGCATC 48767 |||| |||||| Sbjct 7118 AAATTTGCATC 7108 >seq23131 Length=98978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| ||||||||||| ||| ||||| | || ||||| ||||| ||||| || Sbjct 84211 TCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATCTTCCAATTGCTTGCCGGCGAAA 84152 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || ||||| | |||| || |||||||| ||| || || || Sbjct 84151 ATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTT 84092 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || | ||| || || | || || ||||| || || || ||||| || Sbjct 84091 TCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTTAAGGTTTTGACG 84032 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 84031 AAAATTTGCAT 84021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380785677680529