Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq20950 113 4e-20 seq23131 98.7 8e-16 seq11882 82.4 6e-11 >seq20950 Length=58994 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| |||| |||||||| ||||| ||| ||||| || Sbjct 38107 ATGCAAATTTTCGTAAAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCT 38166 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | || ||||| ||||||||||| | || |||||| Sbjct 38167 GATACGATTGAAAACGTAAAAGCTAAAATACAAGACAAAGAGGGTATTCCGCCTGATCAA 38226 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | ||||| || || ||||||||||||||| ||| || |||||||| Sbjct 38227 CAACGATTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAAT 38286 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| ||||| || | |||||| ||||||| || || || Sbjct 38287 ATTCAAAAGGAATCCACTCTTCATTTAGTATTACGATTACGCGGTGGAAT 38336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || ||||| |||| |||||||| ||||| ||| ||||| || Sbjct 37651 ATGCAAATATTCGTTAAAACTCTAACTGGTAAAACTATTACTCTGGAAGTTGAACCGTCC 37710 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| |||||| || ||||| || | || ||||| Sbjct 37711 GACACGATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCACCTGATCAG 37770 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || || || |||||||| ||||||||| || ||| || ||||| || Sbjct 37771 CAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTAGAACATTGAGTGATTACAAT 37830 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||| ||||| || || Sbjct 37831 ATTCAGAAAGAGTCTACCCTTCA 37853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| ||||| || ||||| ||| ||||| || Sbjct 37195 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37254 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || || |||| || |||||||| ||| | || || || Sbjct 37255 GACACGATTGAAAACGTTAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCACCTGACCA 37313 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || || || || |||||||| ||||| | |||| || ||||||||| Sbjct 37314 GCAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTATAA 37373 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| |||||||||||||| || Sbjct 37374 TATTCAGAAAGAATCTACTCTTCA 37397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| ||||| || ||||| ||| ||||| || Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || || |||| || |||||||| ||| | || || || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCACCTGACCA 37541 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || || || || |||||||||||||| |||| | ||||||||| Sbjct 37542 GCAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAA 37601 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| |||||||||||||| || |||| Sbjct 37602 TATTCAGAAAGAATCTACTCTTCATTTGGT 37631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| || || |||||||| ||||| ||| || || || Sbjct 36967 ATGCAAATTTTTGTAAAAACGTTGACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37026 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || |||| || |||||||| ||| | || || || Sbjct 37027 GACACTATCGAGAACGTGAAAGCTAAAATTCAG-GACAAAGAAGGAATCCCACCTGACCA 37085 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || || | || || || || |||||||| ||||| |||| || ||||||||| Sbjct 37086 GCAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGCCGAACTTTGAGCGATTATAA 37145 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| |||||||||||||| || Sbjct 37146 TATTCAGAAAGAATCTACTCTTCA 37169 >seq23131 Length=98978 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| ||||| || |||||||| || |||| || ||| Sbjct 84021 ATGCAAATTTTCGTCAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGT 84080 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| ||||| || ||| | || ||||| Sbjct 84081 GACACTATCGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 84140 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || ||||| |||||||||||| | |||| | | ||||| ||| Sbjct 84141 CAACGTCTCATTTTCGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAAC 84200 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||||||||| ||||| |||| ||| || | || || || Sbjct 84201 ATTCAGAAAGAATCTACATTGCACTTGGTTTTACGACTTCGTGGTGG 84247 >seq11882 Length=45137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| | ||||||||||| || ||| |||| ||||||||| Sbjct 7109 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCA 7168 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||||| || ||||| || | || |||||| Sbjct 7169 GATTCGATTGAAAATGTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 7228 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || || ||||| ||||||||| | || | | || || || Sbjct 7229 CAACGTTTGATCTTCGCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAAT 7288 Query 28734 ATTCAAAAAG--AATCT 28748 |||||||||| ||||| Sbjct 7289 ATTCAAAAAGGTAATCT 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425235143647017