Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq31237 129 3e-25 seq2604 96.9 2e-15 >seq31237 Length=28651 Score = 129 bits (142), Expect = 3e-25 Identities = 173/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 25921 CTCAACT-TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTC 25979 ||||||| ||||| ||||| ||| || ||||||| || ||||||||||| || || | Sbjct 16176 CTCAACTCTTCTC-ATAAACTCATCAGGTATCCACAACGCGTAAAATAAATCCCTAGCGC 16234 Query 25980 TCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCC 26039 |||| ||||| || |||||| | | |||||||||||||||||||| | |||| Sbjct 16235 GAGTTTCCTCTTTACCAGAATTCTTCCTCAATTCTAAGAAATCAAAAATATCCGGATGCC 16294 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 | ||||||||||| | |||||| ||| ||| || || |||||||| || |||| Sbjct 16295 AAGGTTCTAAATAAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCTTGATCAACATATC 16354 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 | || || | |||| |||| | |||||| || | ||| |||| | ||||| || Sbjct 16355 TGGCTGTATTATTGTAAACGCGAAGCATTGGTACGAGACCATTTGATACACCGTTAGT 16412 Score = 93.3 bits (102), Expect = 2e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 25049 TTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTT 25108 |||||||| | ||||| |||| |||||||||||||||||| |||| || || |||||| Sbjct 15061 TTTGAAGTATACGGTTCGAAACTTTCATTATTTCCTAAGATCTGAGCCGTGGAAGCTGTT 15120 Query 25109 GGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTT 25149 |||||| || |||| || |||||||| | |||||| || Sbjct 15121 GGCATTGGAGCCATTAGAAGTGAATTTCTGACACCATACTT 15161 >seq2604 Length=35699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 25942 ATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATT 26001 |||||| | ||| | ||| ||||||||||||| ||||| |||||||| | ||| ||| Sbjct 26778 ATCTGGGACCCATAATGCGTAAAATAAATCTCGAGCTCTGATTTCTTCATGGCCGGTATT 26719 Query 26002 CTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAA 26061 ||| || |||||| || || || ||||| | |||||||||||| | ||| ||||| || Sbjct 26718 TTTTCGTAAATCTAAAAATTCGAATATATCCGCGTGCCATGGTTCAAGATAAATAGCGAA 26659 Query 26062 A 26062 | Sbjct 26658 A 26658 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 ||||||||| || ||||| | || | | | ||| ||||| | ||||||||| |||| Sbjct 27960 AAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAAGATTC 27901 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||||||||||| ||||| | ||||| || || ||||| ||| | | ||||| || Sbjct 27900 GTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTGCAAGAAGAAGCGAGTT 27841 Query 25135 TCTCAAACCAT 25145 ||| ||||||| Sbjct 27840 TCTTAAACCAT 27830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252939084722225