Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq28620 91.5 4e-13 seq16257 84.2 6e-11 >seq28620 Length=33069 Score = 91.5 bits (100), Expect = 4e-13 Identities = 223/333 (67%), Gaps = 14/333 (4%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA---ATTTTGTCTCGCAATT 289086 |||||||| || ||||| ||||| ||||| || || || | ||| | |||| | Sbjct 13570 CCAACAGCGTCGATTTCATCAATAAAAATTACGCAAGGTGCTCGATTCTTAGCCGCACT- 13628 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| || | || || ||||| | ||||| | ||||| ||||||||||| Sbjct 13629 --AAATAAATCACGAACCCGACGAGCTCCTTGTCCAACCAATATTTCATCAAATTCAGAA 13686 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | |||| || | || ||||| || || || |||| || || || || Sbjct 13687 CCAGCAGCATGAAAAAAAGGAACGCCAGCTTCTCCAGCCACAGCCCGAGCTAGTAGGGTT 13746 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC---AGCA 289263 || || ||||| || || || |||||| | || ||||| | |||| | || || Sbjct 13747 TTTCCAGTTCCCGGAGGCCCAACTAATAATGCACCTTTTGGAAGTTTTCCTCCTAATGCT 13806 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || | | || ||||| | ||||||||||| ||||| || | ||| || | || || Sbjct 13807 GA---AAACTTTTCAGGATTTTTTAAAAATTCAACAATCTCTTTAAGCTCTTGCTTGGCT 13863 Query 289324 TCATC-ACATCCTGCTACATCAGCAAAAGTAAT 289355 ||||| ||| ||| |||||| ||||||| || Sbjct 13864 TCATCTACACCCT-TGACATCATCAAAAGTTAT 13895 >seq16257 Length=33598 Score = 84.2 bits (92), Expect = 6e-11 Identities = 100/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 301820 CTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGA 301879 ||||||| | || ||||| ||||||||| ||| || | ||||||||||| |||| Sbjct 6337 CTTCAAT-CTAGGTACACCCAAGGTTACGTT---CTTCGAAGACACACCAGCAAAATGGA 6282 Query 301880 AAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAA 301939 |||||||||| || | ||||||| || || || | |||||| || || | ||| | Sbjct 6281 AAGTATTCAGTGTCATCTGAGTAGCCGGTTCTCCCAAACTTTGGGCAGCTAATGCACCCA 6222 Query 301940 CCATTTCTCCTGGT 301953 |||||||||| ||| Sbjct 6221 CCATTTCTCCAGGT 6208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471200520693651