Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq23131 122 7e-23 seq20950 109 5e-19 seq11882 91.5 1e-13 seq10793 91.5 1e-13 >seq23131 Length=98978 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||| ||||||||||| || ||||| |||||| Sbjct 84021 ATGCAAATTTTCGTCAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGT 84080 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || || || ||| ||||| ||||| | || ||||| Sbjct 84081 GACACTATCGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 84140 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || || || || |||| |||| |||| | | ||||||||| Sbjct 84141 CAACGTCTCATTTTCGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAAC 84200 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||||| ||||||||||| |||||| |||| ||| |||| || || || || Sbjct 84201 ATTCAGAAAGAATCTACATTGCACTTGGTTTTACGACTTCGTGGTGGTAA 84250 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||||||||||||||||||||| ||| | ||| |||||| | Sbjct 83793 ATGCAGATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCTTAGAAGTCGAGCCTAGC 83852 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | ||||| || ||| ||||||||||| | || ||||| Sbjct 83853 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAAGGTATCCCGCCTGATCAG 83912 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || ||||| || || |||| ||||| | |||| |||||| Sbjct 83913 CAACGTTTAATTTTCGCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAAC 83972 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||||||||| || Sbjct 83973 ATCCAAAAAGAATCCAC 83989 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| ||||| || || || |||||||| ||| ||||| |||||| Sbjct 81738 AAAATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTCGAGCCT 81797 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || | | | || ||| |||||| || |||||||| | || ||| Sbjct 81798 AGTGACACCATTGAAAACGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCCGAT 81857 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | || || | || || ||||| || || || | |||||| | |||| ||| Sbjct 81858 CAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTTTCGGACTAC 81917 Query 110450 AACATTCAAAAAGAATCTACGTTGCA 110475 ||||| ||||||||||| || ||||| Sbjct 81918 AACATCCAAAAAGAATCAACCTTGCA 81943 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || |||||||||||||| || ||||| |||||| | Sbjct 83109 ATGCAAATTTTCGTCAAAACCTTGACCGGCAAAACCATCACTCTCGAAGTTGAGCCTAGC 83168 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | ||||| || || || ||||||||| | || || || Sbjct 83169 GATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGCATTCCTCCCGACCAG 83228 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || ||||| || || || || | ||||| | | || || ||| Sbjct 83229 CAACGTCTCATTTTCGCCGGTAAGCAACTCGAAGACGGTAGAACTCTTTCCGACTATAAC 83288 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || || || |||| Sbjct 83289 ATTCAAAAAGAATCGACTTTACATTTGGT 83317 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||||| || || || || || || | ||| || ||| | Sbjct 83337 ATGCAAATCTTCGTTAAAACTTTGACTGGAAAGACAATCACTCTTGAAGTTGAACCTAGC 83396 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| || ||||||||| | || |||||| Sbjct 83397 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 83456 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || ||||||||||| || |||| | || | ||||||| || Sbjct 83457 CAACGTCTCATTTTCGCCGGTAAACAGCTCGAAGATGGTCGTACTCTTTCGGATTATAAT 83516 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||||||||||||||| ||||| Sbjct 83517 ATTCAAAAAGAATCTACCTTGCA 83539 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || |||||||||||||| ||| | ||| |||||| | Sbjct 82425 ATGCAAATTTTCGTCAAAACCTTGACCGGCAAAACCATCACCCTTGAAGTTGAGCCTAGC 82484 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| || |||||||| | || || || Sbjct 82485 GACACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCCGACCAG 82544 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || ||||| || || || | |||||| | |||| || ||| Sbjct 82545 CAACGTTTGATCTTCGCCGGAAAACAACTTGAAGACGGCAGAACTCTTTCGGACTATAAC 82604 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| |||||||| |||| Sbjct 82605 ATCCAAAAAGAATCCACGTTGCATTTGGT 82633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||||||||||| ||||||||||| | ||| || ||| | Sbjct 83565 ATGCAAATTTTTGTTAAAACTTTAACCGGAAAAACCATTACGCTTGAAGTTGAACCTAGC 83624 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| || |||||||| | || ||||| Sbjct 83625 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGTATCCCTCCCGATCAG 83684 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || |||||||| || |||| ||||| | | ||||| || Sbjct 83685 CAACGTTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTAGAACCTTATCAGATTATAAT 83744 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||||||||| || || || || Sbjct 83745 ATTCAAAAAGAGTCAACTTTACA 83767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || || || ||||| || || ||||| |||||| | Sbjct 82197 ATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACTATCACTCTCGAAGTCGAGCCTAGC 82256 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| || |||||||| | || ||||| Sbjct 82257 GACACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCCGATCAG 82316 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || ||||| || || |||| ||||| | |||| ||||| Sbjct 82317 CAACGTTTAATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACTCTTTCGGACTACAAT 82376 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || |||| |||| Sbjct 82377 ATTCAAAAAGAATCCACCCTGCATTTGGT 82405 >seq20950 Length=58994 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 || |||||||| || ||||| ||||||||||| || ||||| || ||| | ||| ||| Sbjct 36733 TTCAAAATGCAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGAG 36792 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || |||||| ||| | || ||| || ||| |||||||||||| | || Sbjct 36793 CCGTCCGATACGATCGAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGCATTCCTCCT 36852 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| ||| || | || | || || ||||||||||| || | | |||| || ||| Sbjct 36853 GATCAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGAT 36912 Query 110447 TACAACATTCAAAAAGAATCTAC 110469 ||||| ||||| ||||| ||||| Sbjct 36913 TACAATATTCAGAAAGAGTCTAC 36935 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || ||||| ||||| | ||| ||||| | Sbjct 37879 ATGCAAATTTTTGTAAAAACGTTAACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37938 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| || || || |||||||| | || || || Sbjct 37939 GACACTATCGAGAACGTGAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAG 37998 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | |||| ||| || ||||| | || |||| | |||| | ||||| ||| Sbjct 37999 CAACGATTAATTTTTGCCGGCAAACAATTAGAAGATGGCCGAACTTTAAGTGATTATAAC 38058 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 38059 ATTCAAAAAGAATCTAC 38075 >seq11882 Length=45137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| | || || ||||| || ||| ||||| || ||| Sbjct 7109 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCA 7168 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| | | | | ||||||||||| ||| || |||||||| | || ||||||| Sbjct 7169 GATTCGATTGAAAATGTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 7228 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || || |||||| |||| |||| || || | |||| ||||| Sbjct 7229 CAACGTTTGATCTTCGCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAAT 7288 Query 110453 ATTCAAAAAG--AATCTACGTT 110472 |||||||||| ||||| |||| Sbjct 7289 ATTCAAAAAGGTAATCTTCGTT 7310 >seq10793 Length=51801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 ||||||||| | |||||||| | ||| |||||| |||||||| || || |||||||| Sbjct 19475 CGGACGTCCGATAGCCTTGGCAACCTCGATCATGTTAACGATGACGGTTTTAATGCCGTT 19416 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 || ||||||||||| || || | | ||||| |||||||||||||| || || Sbjct 19415 CCCTTTTCCTTCGACTTTTGCAATAAGCCTGGGCATCTTGTAGCGGTAGAAAGCATCGCT 19356 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTG 34651 || | || || ||||| | | | ||||| | |||| Sbjct 19355 GACGTGTCGATTCACGTTTAAACTTCCCATGATTGCTG 19318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412676953996439