Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq23131 104 2e-17 seq11882 96.9 2e-15 >seq23131 Length=98978 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || || | || | ||| || || || |||||||||||||| Sbjct 82195 CCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82136 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || || ||||| |||||||||||||||| |||||||||||| | || Sbjct 82135 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGGA 82076 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | ||||| ||| || | | || | || | | |||||| Sbjct 82075 ATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGACT 82016 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || || || || || | ||||||||| ||||| ||||| Sbjct 82015 TCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 81969 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | ||||||| |||| |||| || || || ||||| |||||||| Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || ||||| ||||||||||| || | |||||||| || |||| Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | ||||| || ||| | | || | || | | |||||| Sbjct 83899 ATACCTTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACT 83840 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || || | || || || || |||||||| Sbjct 83839 TCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | || || | || | ||| || || || ||||| |||||||| Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || || ||||| |||||||||||||| || |||||||| || | || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || ||||||| | | || | ||| | | |||||| Sbjct 81847 ATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGACT 81788 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || || | || || |||||||||||||| Sbjct 81787 TCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 81741 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||||||||| || || || || | || |||| |||| |||||| |||||||| Sbjct 84211 TCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATCTTCCAATTGCTTGCCGGCGAAA 84152 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || |||||||| || | || | || |||||||| | ||||| |||||| | Sbjct 84151 ATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTT 84092 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | | |||||| || | || ||||| || || || | ||| || || Sbjct 84091 TCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTTAAGGTTTTGACG 84032 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 84031 AAAATTTGCAT 84021 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| ||||| | ||||||| |||| ||| || || || ||||| |||||||| Sbjct 83107 CCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAA 83048 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || ||||| ||||||||||| || | |||||||| || |||| Sbjct 83047 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 82988 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||||| | | || | || | | |||||| Sbjct 82987 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82928 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || |||||||| || | || || || || |||||||| Sbjct 82927 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || || | || |||| || | ||| || || || |||||||||||||| Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || || ||||| |||||||||||||||| ||||||||||| | || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||| || | | || | || | | ||| || Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACT 82472 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| ||||| || || || | ||| || || || || ||||| Sbjct 82471 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || || | || |||| || | ||| || || || |||||||||||||| Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | | || || ||||| |||||||||||||||| ||||||||||| | || Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | ||||| ||||| | | || | || | | |||||| Sbjct 82759 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82700 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || |||||||| || | || || || || |||||||| Sbjct 82699 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 >seq11882 Length=45137 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || ||||| || |||||||||| | | | |||| |||| || ||||||||||||||| Sbjct 7296 TTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGATC 7237 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||| || || | || | || || || || | ||||| ||||| || | | Sbjct 7236 AAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTTCA 7177 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 ||||| || | ||||| || | ||| || || || ||||||||||| ||||| || Sbjct 7176 ATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGAAA 7117 Query 34970 ATCTGCAT 34977 || ||||| Sbjct 7116 ATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325562909945537