Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq6025 107 3e-18 seq2123 107 3e-18 seq2549 102 1e-16 >seq6025 Length=34027 Score = 107 bits (118), Expect = 3e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 ||| |||| ||||||||||||||| ||| ||| |||| |||||||||||||||||| || Sbjct 19412 GGTTTATGTGATAATTTACTAACAGCTACGGTACGAGCTTGGGATATAAATAAACCT-TT 19470 Query 143154 ATT-TTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATAT 143212 ||| |||||||| || ||||||| |||||||| |||||||| || | | ||| | Sbjct 19471 ATTATTTTGTCCAGCAATGAATACTAGAATGTGGGATCATCCTATAACTGCATCACAAGT 19530 Query 143213 AGATGCTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCTG 143272 || | ||| | ||| | || ||||| ||| || | ||||| | || || Sbjct 19531 AGCACAACTGAAATCTTGGGGCTATATTGAAATTCCATGTATCGCAAAAACATTAATGTG 19590 Query 143273 CGGAGACATAGGAAATGGTGCTATGGCAGAA 143303 |||| |||||| || || ||||| ||| Sbjct 19591 TAAAGACGTAGGAATGGGCGCGATGGCTGAA 19621 >seq2123 Length=17224 Score = 107 bits (118), Expect = 3e-18 Identities = 144/197 (73%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 || ||||| | | ||||||||||| | || | ||| ||| ||| |||||| |||||||| Sbjct 10978 ACCCATGATCTTTTATGGAATGCAGCTCAGAAACAAATGGTGATAGAAGGCAAAATGCAC 11037 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | |||||| ||||||| ||||| || || ||| | |||||||| | || ||| ||||| Sbjct 11038 GGATTTTTAAGAATGTATTGGGCAAAGAAAATATTAGAATGGACCAAAAGTCCAGAAGAG 11097 Query 183130 GCTTTG---AGTTATA-GTATCTATATGAACAATA-AGTACGAACTAGACGGTACGGATC 183184 || ||| | | || || ||| |||| |||| |||| | || |||| |||| Sbjct 11098 GCATTGGAAATCTCTATTTACCTAAATGATAAATATAGTA-----TGGATGGTAGAGATC 11152 Query 183185 CTAACGGATACGTAGGT 183201 | ||||| ||||| ||| Sbjct 11153 CCAACGGCTACGTTGGT 11169 >seq2549 Length=46706 Score = 102 bits (112), Expect = 1e-16 Identities = 209/308 (68%), Gaps = 2/308 (1%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | ||| | ||||||||||| | |||||| | |||| | |||||| | Sbjct 37245 GATAGCAAATGCAGTTTGGTGGTACTACTTTTCTAAATTACTCGAATTTTGCGATACATT 37186 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||||||||| | || ||||| ||| || | | ||| |||| || || ||||||| Sbjct 37185 CTTTTTCATATTGAGAAAAAAAGATAAACAACTCACATTTTTACATGTCTACCATCATTC 37126 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGG-TCAGGCATTTT 58547 ||||| ||| | ||| | ||| | |||||||||| | || | || ||| |||||| Sbjct 37125 GACTATATTTTCCTTATGGTGGATCGGTATTAAATACGTACCAAGCGGCTCA-ACATTTT 37067 Query 58548 TCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGG 58607 || || | |||| | || |||||| | ||||| | || |||||| |||| | Sbjct 37066 TCCCTGCGATGGTGAACAGCTCAATTCATGTTCTCATGTACACGTACTATGGTTTGGCCG 37007 Query 58608 CGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATAATGCAAT 58667 || |||| || || ||||| ||||||||| ||| | ||||| | |||| Sbjct 37006 CGATGGGACCGTCAATTGCTAAATATTTGTGGTGGAAGAAATACTTGACTATGCTTCAAT 36947 Query 58668 TGGTACAA 58675 ||||| || Sbjct 36946 TGGTAAAA 36939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903041670941280