Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq20950 122 8e-23 seq23131 120 3e-22 seq2604 95.1 1e-14 >seq20950 Length=58994 Score = 122 bits (134), Expect = 8e-23 Identities = 155/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 ||||||| ||| ||||||||||| ||||||||||||| || || || | ||| || | Sbjct 36944 AAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCC--GTCTTCCA 36887 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || ||| | || | || ||||| || ||||| |||||||| ||||| ||| Sbjct 36886 GCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTC-CTGA 36828 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| |||| | | | || | ||| |||| ||||| || || | ||||| ||||| Sbjct 36827 ATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTA 36768 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || | |||||| || || |||||||| Sbjct 36767 CCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGC-CCATCGTGGACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| ||||||||||| | | || | || | || || | Sbjct 37856 AAATGAAGGGTAGACTCTTTCTGAATATTGTAATCACTCAATGTTCTACCA-TCTTCCAA 37798 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | | ||||| || || || |||||||| || || ||| Sbjct 37797 CTGTTTGCCGGCGAAAATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTTGGAT 37738 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | |||| |||||||| || || || || | || | ||||| || Sbjct 37737 TTTAGCCTTAACATTTTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTTTTACC 37678 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| || ||||| Sbjct 37677 AGTTAGAGTTTTAACGAATATTTGCAT 37651 >seq23131 Length=98978 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| ||||| || ||| ||||||| || |||||||||||||| |||||||| || Sbjct 83264 GTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTT 83205 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| || ||| | | |||| || ||| | ||||| || |||| |||| Sbjct 83204 ATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACTTCGAGAGTGAT 83145 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||||||| ||||| |||||||| ||||| Sbjct 83144 GGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| || |||||||| | || ||| | || || | |||||||| Sbjct 84217 GTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCA-TCTTCCAATTGCTTGCC 84159 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| ||||||| || ||||| || ||||| || ||||||||||| ||| ||| | || Sbjct 84158 GGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTC-TTGAATTTTAGCCT 84100 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | ||||| || |||| |||| ||||||||| || | | Sbjct 84099 TGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAGAGTGATGGTTTTGCCAGTTAAGG 84040 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||| ||||| Sbjct 84039 TTTTGACGAAAATTTGCAT 84021 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 ||||| | |||||| ||||| || || ||||| || | || || | || ||||| Sbjct 83998 AAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCA-TCTTCGAG 83940 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | || ||||| || || ||||| ||||| ||||| ||| Sbjct 83939 TTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTCC-TGAA 83881 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || || | | || | |||||| | ||||| || || | ||||| |||||||| Sbjct 83880 TTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACTTCTAAGGTGATGGTTTTGC 83821 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| | |||||| |||||||||||||| Sbjct 83820 CGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || || || || ||| | || | || |||||||||||||| || ||||| || Sbjct 82580 GTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTT 82521 Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || ||| ||| |||| | | |||| |||||| | ||||| || || | ||||| Sbjct 82520 ATCT-TGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGA 82462 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||||||| ||||| |||||||| ||||| Sbjct 82461 TGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 ||||||| || |||||||| || ||||| ||||| | || || | || || || Sbjct 83770 AAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGATAAGGTTCTACCA-TCTTCAAG 83712 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | || ||||| ||||||||||| ||||| || || ||| Sbjct 83711 CTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATACCTTCTTTATC-TTGAA 83653 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || || | | || | ||||||| | || || || || | || | |||||| | Sbjct 83652 TTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGCGTAATGGTTTTTC 83593 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| | |||||| || ||||| ||||| Sbjct 83592 CGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || || || || ||| | || | || |||||||||||||| || ||||| || Sbjct 82808 GTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTT 82749 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || ||| ||| || |||| | || | |||||| | ||||| || || | |||| Sbjct 82748 ATCT-TGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGA 82690 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || |||| |||||| |||||||||||||| Sbjct 82689 TTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 ||||| | ||| || ||||| || || ||||| || | || || | || ||||| Sbjct 83086 AAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCA-TCTTCGAG 83028 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | || ||||| || || ||||| ||||| || || ||| Sbjct 83027 TTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTATCT-TGAA 82969 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | || | |||||| | ||||| || || | |||| || || | Sbjct 82968 TTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTCTTTC 82909 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| |||||||||||||| Sbjct 82908 CAGTCAAAGTTTTAACGAAAATCTGCAT 82881 >seq2604 Length=35699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 |||||||| || |||| | || |||| |||| ||| ||| |||||||||| Sbjct 27965 ACCTGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAA 27906 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 || ||||| || || ||||| || ||||| | || || ||||| || | || ||| Sbjct 27905 GATTCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTGCAAGAAGAAGC 27846 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGC 148445 ||||| | ||||| | | ||||||||| ||||| | ||||||||||| | Sbjct 27845 GAGTTTCTTAAACCATGCTGTTTTATTTTTTCCTTCAACGATGCCCAGTCCCATAAATTT 27786 Query 148446 GACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 | ||||| || |||||||| |||||||| | ||| Sbjct 27785 GTTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483223062764520