Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2604 114 3e-20 seq31237 84.2 5e-11 seq18520 84.2 5e-11 >seq2604 Length=35699 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || ||||| ||||| ||||| ||||| | |||||||| ||||| ||||| | || ||| Sbjct 26659 TTCGCTATTTATCTTGAACCATGGCACGCGGATATATTCGAATTTTTAGATTTACGAAAA 26718 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| || ||||||| ||||| || ||||||||||| ||| | ||| | ||||| Sbjct 26719 AATACCGGCCATGAAGAAATCAGAGCTCGAGATTTATTTTACGCATTATGGGTCCCAGAT 26778 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 |||||| ||||| | || | | | ||| ||||||||||||| ||| | | Sbjct 26779 GAGTTCATGCGGCGTGTAGAGAAAGAAGAAAAATGGAGTCTTATGTGTCCTAATCAATGT 26838 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTAC-GAAA 110985 |||||||| || ||| | ||| | || |||||| | || ||| |||| Sbjct 26839 CCTGGTCTCTCGGATTGTTGGGGAGATGAATTTGAAAAACTGTACAGAAA 26888 Score = 102 bits (112), Expect = 2e-16 Identities = 87/105 (83%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 111051 GAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGCAA 111109 || || ||| ||||||||||||| |||||||| ||||||||||| |||| |||| | || Sbjct 27027 GACTCGCAAATTGAAACTGGAACGCCTTATATGTTGTATAAAGATTCAT-GTAATAGAAA 27085 Query 111110 ATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 |||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 27086 ATCTAATCAACAAAATTTAGGAACCATTAAAAGTAGTAATCTGTG 27130 >seq31237 Length=28651 Score = 84.2 bits (92), Expect = 5e-11 Identities = 271/416 (65%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 |||||| ||| ||| || | || || |||||||||||| | | | || | | | Sbjct 16554 TTGCTTCCTTATAGCTATGGAAGAAGACAGTATTGAAGGTATATTTCACACTTTGACAAG 16495 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTC 110641 | |||| | || || ||| | |||||||| ||| | ||| ||||| || | | Sbjct 16494 ATGTGCTTTAATATCCAAATCAGCCGGAGGAATCGGTTTACACATTCATTGCATCAGAGC 16435 Query 110642 AA-AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | || ||| | || || | | || |||| |||| ||| || || |||||| | Sbjct 16434 TACAAATAGCTAC-ATTGCTGGAACTAACGGTGTATCAAATGGTCTCGTACCAATGCTTC 16376 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCAT 110757 | || | ||| | || || | |||||| ||||||| || || |||| || | | Sbjct 16375 GCGTTTACAATAATACAGCCAGATATGTTGATCAAGGAGGCAACAAGAGACCGGGTGCTT 16316 Query 110758 TTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA 110817 |||| | ||| | |||||||||||| | ||||| ||||| ||||||||| | | || | Sbjct 16315 TTGCCCTTTATTTAGAACCTTGGCATCCGGATATTTTTGATTTCTTAGAATTGAGGAAGA 16256 Query 110818 ATCAAGGATTTGAAGAACAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 || || | |||| ||| | || | ||||||||||| || ||||||| | | Sbjct 16255 ATTCTGG---TAAAGAGGAAACTCGCGCTAGGGATTTATTTTACGCGTTGTGGATACCTG 16199 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 || || |||| | | ||| | | ||| | ||| ||| ||||| ||| || Sbjct 16198 ATGAGTTTATGAGAAGAGTTGAGAATGATGAAAAATGGAGTCTAATGTGCCCTAAT 16143 >seq18520 Length=156137 Score = 84.2 bits (92), Expect = 5e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 167250 CCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACG 167308 || || ||||| |||||| |||| |||||||| || ||||||| ||| ||||||| | Sbjct 12490 CCGGCGTTATCAAATTCAC-CGCAATAATTTGGAGCGGAAAATAAAGTTACTAATTGTCT 12548 Query 167309 ATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || |||| ||||| || |||||||||||||||| ||| || || Sbjct 12549 CTTTGAAAAAAATTCGTATCCATCTTCAACAACTTGATGTGCTCG 12593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186315212785803