Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq20950 118 3e-21 seq23131 116 9e-21 seq11882 113 1e-19 >seq20950 Length=58994 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||| ||||||| ||| || ||||| | ||| Sbjct 37666 AAAACTCTAACTGGTAAAACTATTACTCTGGAAGTTGAACCGTCCGACACGATTGAAAAT 37725 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||||| |||||||| ||| || || |||||| | || ||| Sbjct 37726 GTTAAGGCTAAAATCCAAGATAAAGAAGGCATTCCACCTGATCAGCAAAGATTAATTTTC 37785 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || |||||||||||||| || || ||| |||||||| | |||||||||||| Sbjct 37786 GCCGGCAAACAGTTGGAAGATGGTAGAACATTGAGTGATTACAATATTCAGAAAGAGTCT 37845 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 37846 ACCCTTCA 37853 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || || ||||| || || || ||||| ||| ||||| || ||||| Sbjct 38350 AAAACGTTGACTGGTAAAACAATTACATTAGAAGTCGAACCATCTGATACCATCGAAAAT 38409 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| || || ||| ||| | || ||||| Sbjct 38410 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATCCCACCCGACCAGCAACGTCTAATCTT 38468 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || ||||||||||| | ||||| ||| ||||| | ||||||||| Sbjct 38469 CGCCGGTAAACAATTGGAAGATGGTCGTACTTTAAGCGACTACAATATTCAGAAAGAGAG 38528 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 ||||||||| | ||| | ||| Sbjct 38529 TACTCTTCATTTGGTTCTTAGA 38550 Score = 113 bits (124), Expect = 1e-19 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| | || || ||||| ||||| |||||||| || Sbjct 36736 AAAATG---CAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGAG 36792 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || || ||||| || ||||| ||| ||||| || |||||||| ||| || Sbjct 36793 CCGTCCGATACGATCGAAAACGTTAAAGCCAAA-ATTCAGGACAAAGAAGGCATTCCTCC 36851 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| || | |||||||| ||||| ||| ||||||| || | |||||| ||| Sbjct 36852 TGATCAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGA 36911 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||| | |||||||||||||| || || Sbjct 36912 TTACAATATTCAGAAAGAGTCTACCCTACA 36941 Score = 113 bits (124), Expect = 1e-19 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 |||||| | || || ||||| || ||||||||||| || || ||||| |||| | | Sbjct 36982 AAAACGTTGACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCCGACACTATCGAGAAC 37041 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||| ||||| || ||||||||||| || ||| ||| || | || || Sbjct 37042 GTGAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCACCTGACCAGCAACGATTAATTTT 37100 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || ||||| || | |||||| |||||| || | |||||||| || Sbjct 37101 CGCCGGAAAACAATTAGAAGACGGCCGAACTTTGAGCGATTATAATATTCAGAAAGAATC 37160 Query 206364 TACTCTTCA 206372 ||||||||| Sbjct 37161 TACTCTTCA 37169 Score = 104 bits (114), Expect = 6e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || ||| ||||||| ||| || ||||| | ||| Sbjct 37210 AAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCCGACACGATTGAAAAC 37269 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || ||||||||||| || ||| ||| || | || || Sbjct 37270 GTTAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCACCTGACCAGCAACGATTAATTTT 37328 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || || ||||| || | |||||| |||||| || | |||||||| || Sbjct 37329 CGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTATAATATTCAGAAAGAATC 37388 Query 206364 TACTCTTCA 206372 ||||||||| Sbjct 37389 TACTCTTCA 37397 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || || ||| ||||||| ||| || ||||| | ||| Sbjct 37438 AAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCCGACACGATTGAAAAC 37497 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || ||||||||||| || ||| ||| || | || || Sbjct 37498 GTTAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCACCTGACCAGCAACGATTAATTTT 37556 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || |||||||| || | ||||| |||||| || | |||||||| || Sbjct 37557 CGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAATATTCAGAAAGAATC 37616 Query 206364 TACTCTTCA 206372 ||||||||| Sbjct 37617 TACTCTTCA 37625 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 |||||| | || || ||||| || ||||||||||| || || ||||| |||| | | Sbjct 37894 AAAACGTTAACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCCGACACTATCGAGAAC 37953 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||| || ||||| |||||||| || || ||| ||| || | || || Sbjct 37954 GTGAAAGCTAAA-ATCCAAGATAAAGAAGGTATCCCACCCGACCAGCAACGATTAATTTT 38012 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || |||||||| | ||||| ||||| ||| | || ||||| || Sbjct 38013 TGCCGGCAAACAATTAGAAGATGGCCGAACTTTAAGTGATTATAACATTCAAAAAGAATC 38072 Query 206364 TACTCTTCACCTTGT 206378 ||||||||| || || Sbjct 38073 TACTCTTCATCTGGT 38087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||| | ||||| ||| ||||| || | ||| Sbjct 38122 AAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCTGATACGATTGAAAAC 38181 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| ||||| || ||| ||| || ||| || | ||||| Sbjct 38182 GTAAAAGCTAAA-ATACAAGACAAAGAGGGTATTCCGCCTGATCAACAACGATTAATCTT 38240 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | || ||| ||||| || | || || || || Sbjct 38241 CGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAATATTCAAAAGGAATC 38300 Query 206364 TACTCTTCA 206372 |||||||| Sbjct 38301 CACTCTTCA 38309 >seq23131 Length=98978 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| |||||| | ||||| || | |||||| ||||| Sbjct 84035 CAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGTGACACTATCGAAAA 84094 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| || ||||||||| || || ||| | || || || Sbjct 84095 CGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAGCAACGTCTCATTTT 84154 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| ||||||||||| | ||| | | ||||||||| | |||||||| || Sbjct 84155 CGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAACATTCAGAAAGAATC 84214 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | ||||| ||||||| Sbjct 84215 TACATTGCACTTGGTTTTACGACTTCG 84241 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| |||||| | || || ||||| ||||| | ||||| || Sbjct 81738 AAAATG---CAGATCTTTGTGAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTCGAG 81794 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 | |||||| | ||| || ||||| || ||||||||| |||||||| ||| || Sbjct 81795 CCTAGTGACACCATTGAAAACGTCAAAGCTAA-GATTCAAGATAAAGAAGGTATTCCTCC 81853 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | || |||||||||||||| || | ||||| || || ||| | | || Sbjct 81854 CGATCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTTTCGGA 81913 Query 206343 TTACAACGTCCAGAAAGAGTCTAC 206366 |||||| |||| ||||| || || Sbjct 81914 CTACAACATCCAAAAAGAATCAAC 81937 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| || ||||| || ||||| || | ||||| ||||| Sbjct 82896 AAAACTTTGACTGGAAAGACAATCACATTAGAAGTCGAGCCTAGCGACACCATCGAAAAT 82955 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || ||| || ||| | | || ||| Sbjct 82956 GTCAAGGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGATCAGCAACGTTTAATTTTC 83015 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || | |||||||| || ||| | | || |||||| |||| ||||| ||| Sbjct 83016 GCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAACATCCAAAAAGAATCT 83075 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 83076 ACCCTTCA 83083 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| || ||||| || | ||||| ||||| Sbjct 83808 AAAACTTTAACCGGCAAAACCATCACCTTAGAAGTCGAGCCTAGCGACACCATCGAAAAC 83867 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || ||||| || |||||||| || ||| || ||| | | || ||| Sbjct 83868 GTAAAGGCCAAAATTCAGGACAAAGAAGGTATCCCGCCTGATCAGCAACGTTTAATTTTC 83927 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| || | |||||||| || ||| | | || |||||| |||| ||||| || Sbjct 83928 GCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAACATCCAAAAAGAATCC 83987 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 83988 ACCCTTCA 83995 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || | ||||| ||| | ||||| ||||| Sbjct 83580 AAAACTTTAACCGGAAAAACCATTACGCTTGAAGTTGAACCTAGCGACACGATCGAAAAT 83639 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || ||| | | ||||| Sbjct 83640 GTGAAAGCCAAA-ATTCAAGATAAAGAAGGTATCCCTCCCGATCAGCAACGTTTGATCTT 83698 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||| | |||||||| || || || | ||||| || | || |||||||| Sbjct 83699 CGCCGGAAAACAGCTTGAAGATGGTAGAACCTTATCAGATTATAATATTCAAAAAGAGTC 83758 Query 206364 TACT 206367 ||| Sbjct 83759 AACT 83762 >seq11882 Length=45137 Score = 113 bits (124), Expect = 1e-19 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||| || | | ||| Sbjct 7124 AAAACCCTCACGGGTAAAACAATCACCCTCGAAGTCGAACCTTCAGATTCGATTGAAAAT 7183 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| || || |||||||| |||||||| ||| ||||| ||| | | |||||| Sbjct 7184 GTAAAACAGAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAACAACGTTTGATCTTC 7243 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 |||||||| |||||||||||||||||||| || | || ||||| | || |||| Sbjct 7244 GCCGGAAAACAGTTGGAAGATGGAAGGACCTTATCGGACTACAATATTCAAAAAG 7298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181325305748883