Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq20950 122 7e-23 seq23131 107 2e-18 seq19760 82.4 6e-11 >seq20950 Length=58994 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| |||||||| || || ||||| ||||| ||| || | Sbjct 36967 ATGCAAATTTTTGTAAAAACGTTGACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37026 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | |||||| |||||| ||||||||||| | || ||| || Sbjct 37027 GACACTATCGAGAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37086 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||||||||||| |||| || ||||||| || Sbjct 37087 CAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGCCGAACTTTGAGCGATTATAAT 37146 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||||||||| || ||||||||| Sbjct 37147 ATTCAGAAAGAATCTACTCTTCATTTAGTA 37176 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 37195 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37254 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || ||| || Sbjct 37255 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37314 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||||||||||| | |||| || ||||||| || Sbjct 37315 CAACGATTAATTTTCGCCGGAAAACAATTAGAAGACGGTCGAACTTTGAGCGATTATAAT 37374 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||||||||| || ||||||||| Sbjct 37375 ATTCAGAAAGAATCTACTCTTCATTTAGTA 37404 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| || ||||| || || ||||| ||||| ||| || | Sbjct 37879 ATGCAAATTTTTGTAAAAACGTTAACTGGTAAAACTATTACTTTGGAAGTAGAGCCATCC 37938 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | |||||| ||||| || |||||||| | || || || Sbjct 37939 GACACTATCGAGAACGTGAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCCGACCAG 37998 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| |||||||||||||||||| |||| | | ||||| ||| Sbjct 37999 CAACGATTAATTTTTGCCGGCAAACAATTAGAAGATGGCCGAACTTTAAGTGATTATAAC 38058 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| || ||| | ||| | | ||||| || || Sbjct 38059 ATTCAAAAAGAATCTACTCTTCATCTGGTACTTCGTTTACGTGGTGG 38105 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| || ||||| ||||| || ||||| || || || ||| ||||| || Sbjct 36732 TTTCAAAATGCAGATCTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTCGA 36791 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || |||| | | | | || ||| |||||| |||||||||||| | || Sbjct 36792 GCCGTCCGATACGATCGAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGCATTCCTCC 36851 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 |||||| ||| | | || | || || ||||| | ||||| |||| || |||| Sbjct 36852 TGATCAGCAACGATTGATCTTCGCTGGAAAACAGCTGGAAGACGGCCGAACTTTGAGCGA 36911 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 |||||| || || ||||| ||||| |||||||||||| Sbjct 36912 TTACAATATTCAGAAAGAGTCTACCCTACATTTAGTA 36948 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 37423 ATGCAAATTTTCGTGAAAACATTAACTGGTAAGACTATTACTCTGGAAGTCGAACCGTCC 37482 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||||||||| | || ||| || Sbjct 37483 GACACGATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGAATCCCACCTGACCAG 37542 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||||| ||||| |||| | ||||||| || Sbjct 37543 CAACGATTAATTTTCGCTGGAAAACAATTGGAAGACGGCCGAACTTTAAGCGATTATAAT 37602 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||||||||| || ||||| || Sbjct 37603 ATTCAGAAAGAATCTACTCTTCATTTGGT 37631 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| | || || || || ||||| | ||| ||||| Sbjct 38107 ATGCAAATTTTCGTAAAAACTCTAACCGGTAAAACTATTACTCTAGAAGTCGAACCATCT 38166 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| |||||||| || | || ||||||| Sbjct 38167 GATACGATTGAAAACGTAAAAGCTAAAATACAAGACAAAGAGGGTATTCCGCCTGATCAA 38226 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | || || |||||||| |||||| ||| || | ||||| || Sbjct 38227 CAACGATTAATCTTCGCTGGTAAACAATTGGAAGATGGCCGAACATTGAGTGATTATAAT 38286 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||| ||||| || || ||||||||||| | ||||| || ||| Sbjct 38287 ATTCAAAAGGAATCCACTCTTCATTTAGTATTACGATTACGCGGTGGA 38334 >seq23131 Length=98978 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || |||||||| |||||||| ||||| || || | ||| ||||| || Sbjct 83337 ATGCAAATCTTCGTTAAAACTTTGACTGGAAAGACAATCACTCTTGAAGTTGAACCTAGC 83396 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | |||||| |||||| || ||||||||| | || ||||||| Sbjct 83397 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCTGATCAA 83456 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| || || ||||| | |||||| | ||| | ||||| || Sbjct 83457 CAACGTCTCATTTTCGCCGGTAAACAGCTCGAAGATGGTCGTACTCTTTCGGATTATAAT 83516 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| | |||||||| | | ||| ||||||| Sbjct 83517 ATTCAAAAAGAATCTACCTTGCATTTAGTTCTTCGTTTAAGAGGAGG 83563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| |||||||| || || || || | ||| || || || Sbjct 82197 ATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACTATCACTCTCGAAGTCGAGCCTAGC 82256 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 82257 GACACAATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGTATCCCGCCCGATCAG 82316 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || |||||| | |||||| || |||| | || ||||| Sbjct 82317 CAACGTTTAATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACTCTTTCGGACTACAAT 82376 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || || ||||| || | | ||| ||||||| Sbjct 82377 ATTCAAAAAGAATCCACCCTGCATTTGGTCCTTCGTTTAAGAGGAGG 82423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| |||||||| |||||||| ||||| || || | ||| || || || Sbjct 82881 ATGCAGATTTTCGTTAAAACTTTGACTGGAAAGACAATCACATTAGAAGTCGAGCCTAGC 82940 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || || |||||| || |||||||| | || |||||| Sbjct 82941 GACACCATCGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATCCCGCCTGATCAG 83000 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||| | |||||| || |||| | || |||||| Sbjct 83001 CAACGTTTAATTTTCGCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAAC 83060 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| || ||||| || | | || ||||||| Sbjct 83061 ATCCAAAAAGAATCTACCCTTCATTTGGTCCTCCGTTTGAGAGGAGG 83107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| |||||||| || || ||||| ||||| ||| | ||| || || || Sbjct 83793 ATGCAGATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCTTAGAAGTCGAGCCTAGC 83852 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || || |||||| ||||||||||| | || |||||| Sbjct 83853 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAAGGTATCCCGCCTGATCAG 83912 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| || || |||||| | |||||| || |||| | || |||||| Sbjct 83913 CAACGTTTAATTTTCGCCGGAAAACAACTCGAAGATGGTAGAACTCTTTCGGACTACAAC 83972 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || || ||||| || | | || ||||||| Sbjct 83973 ATCCAAAAAGAATCCACCCTTCATTTGGTCCTTCGTTTGAGAGGAGG 84019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| || |||||||| ||||| || | ||| || || | Sbjct 84021 ATGCAAATTTTCGTCAAAACCTTAACTGGCAAAACCATCACTCTCGAAGTCGAGCCTAGT 84080 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || || |||||| ||||| ||||| | || |||||| Sbjct 84081 GACACTATCGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 84140 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| || ||||| ||||| |||||| | |||| | ||||||||| Sbjct 84141 CAACGTCTCATTTTCGCCGGCAAGCAATTGGAAGATGGTCGAACTCTTTCTGATTACAAC 84200 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || || |||||||||||| | || || || || Sbjct 84201 ATTCAGAAAGAATCTACATTGCACTTGGTTTT 84232 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| ||||| ||||| ||||| || | ||| || || || Sbjct 83109 ATGCAAATTTTCGTCAAAACCTTGACCGGCAAAACCATCACTCTCGAAGTTGAGCCTAGC 83168 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || ||||| || ||||||||| | || || || Sbjct 83169 GATACTATTGAAAATGTAAAGGCTAAAATCCAAGATAAAGAAGGCATTCCTCCCGACCAG 83228 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| || || || ||| | ||||| || |||| | ||| || ||| Sbjct 83229 CAACGTCTCATTTTCGCCGGTAAGCAACTCGAAGACGGTAGAACTCTTTCCGACTATAAC 83288 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || ||||||| || | | || ||||||| Sbjct 83289 ATTCAAAAAGAATCGACTTTACATTTGGTTCTCCGTTTGAGAGGAGG 83335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||| ||||| |||||||| || ||||| ||| | ||| || || Sbjct 81737 AAAAATGCAGATCTTTGTGAAAACGTTGACTGGTAAAACCATCACCCTCGAAGTCGAGCC 81796 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | || | ||| | || ||| || ||| || |||||||| | || || Sbjct 81797 TAGTGACACCATTGAAAACGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCCGA 81856 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| ||| | || || | || || |||||| | ||||| | |||| | || || Sbjct 81857 TCAGCAACGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACTCTTTCGGACTA 81916 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||| ||||||||||| || | |||||||| | | || ||||||| Sbjct 81917 CAACATCCAAAAAGAATCAACCTTGCATTTAGTTCTCCGTTTGAGAGGAGG 81967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||||||||| || || || || |||||||| | ||| ||||| || Sbjct 83565 ATGCAAATTTTTGTTAAAACTTTAACCGGAAAAACCATTACGCTTGAAGTTGAACCTAGC 83624 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | |||||| |||||| || |||||||| | || ||||| Sbjct 83625 GACACGATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGTATCCCTCCCGATCAG 83684 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | || || ||||| | |||||| || ||| | ||||| || Sbjct 83685 CAACGTTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTAGAACCTTATCAGATTATAAT 83744 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||| || || |||||||||| Sbjct 83745 ATTCAAAAAGAGTCAACTTTACATTTAGT 83773 >seq19760 Length=34946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 |||||||||| | || |||| ||| || |||||| |||||||| |||| | || Sbjct 26117 TGATCAACAACGTCTGATTTTTGCCGGAAAACAACTAGAAGATGGGCGAACTCTTTCAGA 26176 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||||| || ||||||||||| || | ||||||||||| | ||| |||| ||| Sbjct 26177 TTACAATATTCAAAAAGAATCAACTTTGCATTTAGTATTACGATTAAGAGGTGGA 26231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402169146303584