Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq32043 152 7e-32 seq31824 145 1e-29 seq2604 113 6e-20 seq31237 100 4e-16 >seq32043 Length=59240 Score = 152 bits (168), Expect = 7e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 |||| || |||||| | || ||||| || || | ||||||||| |||||||| | || Sbjct 34692 TTCAACAGGATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATT 34751 Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACA 39987 ||||| | ||||| |||||||| ||| |||| || |||| || |||||| ||| | | Sbjct 34752 CTCAATGGTGATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAA 34811 Query 39988 AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATAC 40047 || | || | | |||||||||||| || ||||| ||| ||||||||||| || || Sbjct 34812 GAAACGCTCGACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAAC 34871 Query 40048 ATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 |||| |||||| | | |||| || ||| ||| ||| | |||||| ||| ||| Sbjct 34872 ATGTGAAATAAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATC 34925 Score = 123 bits (136), Expect = 3e-23 Identities = 165/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || ||||| ||| || || | |||||||||| || | ||||| Sbjct 34389 TCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTTTA 34448 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| ||||| ||| |||| ||| || || ||||| || || ||||| || Sbjct 34449 AGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACGCG 34508 Query 39761 ACAAGTCTCTCTCCGTAACTTGTATCATTATG------TATCCACTTCTGTGCCCAATCA 39814 | | ||| ||||| || ||| |||| || ||||||| || |||||||| Sbjct 34509 ATGATTCTTTCTCCAAAA---GTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCT 34565 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 ||||| | || ||||||||||| ||||| |||||||| || ||| ||| Sbjct 34566 GCTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAAAT 34614 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || |||||||| || || |||||||| | ||| | ||||||||| || | || Sbjct 34130 ATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCATGGATAC 34189 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGT 39570 ||||| ||| || |||| ||| |||| ||| || | ||||| || || || ||| Sbjct 34190 TGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAATTTCTGT 34249 Query 39571 TACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACA 39630 | | | ||| |||| ||| || | |||||||||||||||||||| || || ||| Sbjct 34250 AATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAAATCAGT 34309 Query 39631 ATGTAGGCCCT 39641 ||| | ||||| Sbjct 34310 ATGCAAGCCCT 34320 >seq31824 Length=40797 Score = 145 bits (160), Expect = 1e-29 Identities = 165/221 (75%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||| ||||| || || || | |||||||| || || | ||| || Sbjct 10846 TCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCTTT 10905 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || |||||| |||||||||||| || ||||| || ||||||||||| Sbjct 10906 AGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATGCG 10965 Query 39761 ACAAGTCTCTCTCCGTAACTTGTATCATTATG------TATCCACTTCTGTGCCCAATCA 39814 | || ||| || || | |||| |||| || |||||| ||| ||||| || Sbjct 10966 ATAATTCTTTCCCC---AAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCT 11022 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||||| |||| ||||||||||| ||||| |||||||| || Sbjct 11023 GCTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| || || ||||| || | ||||||||||| ||||| | || || || | Sbjct 11161 ATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGT 11220 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||||||||||||| |||| ||||||| ||| || || ||| | | || | ||| Sbjct 11221 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC 11280 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | |||||| ||||| || || ||| ||| || ||||||||||| || ||| ||| Sbjct 11281 GACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAAT 11340 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | | |||| || || | | ||| | ||| || ||| ||| Sbjct 11341 GAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 >seq2604 Length=35699 Score = 113 bits (124), Expect = 6e-20 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || ||||| || | | ||||| || ||| ||||| ||||| | |||| Sbjct 27962 TGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAAGAT 27903 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || |||||||| | |||||| || || || || || |||||||||| || || || | | Sbjct 27902 TCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAAGAAGCGA 27844 Query 68839 -TTTCTAAGACCATG-TGTTATGATTTTATCTTTTA--GATGTTTCCAATCCCAAAGATC 68894 ||||| | |||||| |||| | ||||| || || | |||| ||| ||||| | || Sbjct 27843 GTTTCTTAAACCATGCTGTT-TTATTTTTTCCTTCAACGATG--CCCAGTCCCATAAATT 27787 Query 68895 AGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 | |||| ||||||||| | |||||| |||| ||| Sbjct 27786 TGTTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751 Score = 105 bits (116), Expect = 9e-18 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 69995 CCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATG 70054 ||||| | |||||||||||||| || |||||||| || ||| || | | ||| || | Sbjct 26269 CCGCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGG 26210 Query 70055 TTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 |||||||||| | || || || ||| | |||||||| | | || |||||||||||| Sbjct 26209 TTTCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATA 26151 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || || || ||||| || ||| ||||||||||| ||| || || || |||| Sbjct 26150 TGTTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCA 26096 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 ||||||| |||||| ||||| || || ||||| || | ||| || | || |||| | | Sbjct 25780 CTAAATATTTTTTTGGTTTCTTTATGCAAATTAGAAACGGCAATACGAGCGGCTAATACA 25721 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| |||||||| | || || | ||| || |||| || || | |||||||| Sbjct 25720 GCATAATCAGGATGCCGAGTTGTCATCGAAGCCGCAGTTTCAGCTGCGAGATTATCTAAT 25661 Query 70456 TCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 || ||||| || || || | ||| ||| ||||||||||||| || || Sbjct 25660 TCCATAGTAGTGACGCCAGGAAATAAACCTCGAATAACTTTCATCGCAAT 25611 >seq31237 Length=28651 Score = 100 bits (110), Expect = 4e-16 Identities = 150/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 ||| || || || ||||| |||||||| |||| ||| || || ||||| || || || Sbjct 15322 TGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTCGCAACTAGCTTCCAA 15381 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 |||||||||||||| ||||| ||||| | |||| || || | || | ||| || Sbjct 15382 AGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTGAGATTTTTCACTTTC 15441 Query 69066 GAATGGA----TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGA 69121 ||||||| | || ||| |||||| ||| || | |||||||| ||||| || | Sbjct 15442 GAATGGAAGCCTCAT-TAA---AATAAACAAATCAGCTAGTCCCTGAATACCAATTCCAA 15497 Query 69122 TAGGTCTATGTCTCTTATTTGAACTTTCAGC 69152 | ||||||||||| ||| || || |||| Sbjct 15498 TGGGTCTATGTCTGAGATTAGACTTTGCAGC 15528 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 ||||||||||||||||||| || || || | ||| | ||||| || || ||||||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| |||| ||||| || || ||||||||||| || |||||||||| ||| ||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 68561 TTTGAGGAATTTCCCAAATAGTCT--TAAAAATCT 68593 | || |||||||| | ||| | |||| |||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAAGATCT 14753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 134/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||| | ||||||||||| || ||||| || || ||||| ||||| || | | |||| Sbjct 16646 GTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAATATTTTAACGACATTAAATTG 16705 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || |||||||| || || ||||| |||||| || || | || ||||| ||| Sbjct 16706 TAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATACCGATAGATACTCGCATTAAC 16765 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||| ||||| ||||| || | | || |||||||| | || || ||||||| | Sbjct 16766 ATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTCAATAAATACGACTTTTCCA-A 16824 Query 70171 GTTTTAAA 70178 | | |||| Sbjct 16825 GGTCTAAA 16832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686627828541720