Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16112 176 4e-39 seq31824 127 2e-24 seq32043 105 5e-18 seq16312 102 6e-17 >seq16112 Length=40353 Score = 176 bits (194), Expect = 4e-39 Identities = 248/347 (71%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 40864 AAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA 40923 |||||||||| ||||| ||||||||||||| | | ||||||||||||| |||| | Sbjct 33767 AAGGTGATCTCGGTCCGATTTATGGATTTCAATGGAGACATTTTGGAGCCGAATACAAAG 33708 Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGA 40983 |||| | | || || || |||||||| | ||||||||| | |||||||||| | Sbjct 33707 ATATGCATACCGACTACACGAATAAAGGCGTAGATCAATTAAAAAATATTATAGATACCA 33648 Query 40984 TTAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 ||||| | || ||||| || | ||||| | || |||||||| || || Sbjct 33647 TTAAAAATAACCCAGACGATA---GAAGAATAATCCTATGTGCGTGGAATCCTCTTGATT 33591 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTG 41100 | | ||||||||| || |||||||||| || ||||| || | ||||| | Sbjct 33590 TGCCCAAGATGGCATTACCTCCTTGTCATTGTCTAGTGCAGTTCTATGCGGTGAATGGAG 33531 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 |||| ||||| | | |||||||| | |||| |||||||| |||| || || ||||| | Sbjct 33530 AACTATCATGCCTAATGTATCAACGTTCAGCCGACATGGGTTTAGGTGTACCTTTTAATA 33471 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 | || ||||| || ||||||| | |||||| ||||| ||||| ||| Sbjct 33470 TTGCCAGTTACGCCTTGCTCACTTGTATGATCGCACATGTTACAAAT 33424 >seq31824 Length=40797 Score = 127 bits (140), Expect = 2e-24 Identities = 133/172 (77%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTT 44134 |||||||||||||| | ||||||||| || ||||| | | ||||| ||| || || Sbjct 11027 AAAGCAGACTGGGCGTTGAAATGGATAGCCGATCAAAATGCTACATTTGGGGAAAGAATT 10968 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 |||| ||||||| || ||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 10967 ATCGCATTTGCAGCCGTCGAAGGAATTTTCTTTTCTGGAAGTTTTGCAGCGATATTTTGG 10908 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTAAT 44244 ||||||| |||| | |||||||||||||| ||||| ||||| || || Sbjct 10907 CTAAAGAAGAGAGGCCTTATGCCTGGGTTGAC--TTTCAGCAATGAATTGAT 10858 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 |||| ||| | |||| | | || || || || ||||| ||||| ||||| |||| Sbjct 11363 TAAAGCCAGAGGAAAGAAAATTCATTTCACACGTGTTGGCATTTTTCGCTGCTTCTGACG 11304 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | || || || |||||| | || || || |||||||| || | || ||||| Sbjct 11303 GTATCGTGAACGAAAATCTTGTCGAACGTTTCTTTCAAGAAGTCCAGATTCCTGAAGCCA 11244 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 ||| |||||| || |||||||| ||||||| ||| | |||||||||||||| || | Sbjct 11243 GATTTTTTTACGGATTTCAAATCACCATAGAGAATGTACATTCGGAAATGTATAGCTTAT 11184 Query 43998 TGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||| || ||| Sbjct 11183 TGATAGACACTTACATTAAGGAT 11161 >seq32043 Length=59240 Score = 105 bits (116), Expect = 5e-18 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101 || ||||| || ||||| | ||| ||||| |||||||| ||||| | | ||| Sbjct 34606 TTCAATGCTATCGAAACTATGCCTTGTGTTAAAAGAAAAGCAGATTGGGCTTTGAGGTGG 34547 Query 44102 ATAAAT--TCAAA-TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGC 44158 ||| | ||||| || | ||||||||||| || | |||||||||| | ||| ||||| Sbjct 34546 ATAGCTGATCAAAATGCTACTTTTGGAGAAAGAATCATCGCGTTTGCTGCTGTCGAAGGA 34487 Query 44159 ATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCT 44218 ||||| ||| | || || || || ||||||||| | || ||| |||| || |||||| Sbjct 34486 ATTTTTTTTACTGGGAGTTTCGCTGCGATATTTTGGCTTAAAAAAAGAGGCTTAATGCCT 34427 Query 44219 GGGTTGACGTTTTCA--AATGAGTTAATAAGTCGTGATGAAG 44258 || || || ||||| ||||| || ||| | ||||||| Sbjct 34426 GGTTTAAC--TTTCAGTAATGAATTGATATCAAGAGATGAAG 34387 >seq16312 Length=15809 Score = 102 bits (112), Expect = 6e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 19327 TTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACA 19386 || ||||||||||| || || || | | ||||| || || || ||| |||||| Sbjct 7702 TTAGGATGTAAACACGTCAAGGGTATTCTATTATATGGACCTCCTGGAACTGGTAAAACA 7761 Query 19387 TTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || || | || || ||||| | | | | | || |||||||| |||||| Sbjct 7762 TTGATGGCTCGTCAAATTGGTAAAATGTTGAATGCTCGAGAGCCAAAAATTGTGAATGGT 7821 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 ||| |||| || |||||||||| || |||| |||| |||| | || || |||||||| Sbjct 7822 CCTCAAATTTTGGATAAATATGTTGGAGAATCAGAAGCAAATATTCGTCGATTGTTTGCA 7881 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || |||||||||||| ||||| Sbjct 7882 GATGCTGAAGAAGAAGAAAAA 7902 Score = 100 bits (110), Expect = 2e-16 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---TGG 19604 |||||| ||||| ||| | |||||| | || || || ||||| |||||| || ||| Sbjct 7990 TTTGCATATTATTATATTTGATGAAATTGATGCTATTTGTAAAGCAAGAGGATCCGTTGG 8049 Query 19605 TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | |||| || || || ||||||||||| ||||| | || | ||| | || ||||| Sbjct 8050 CGGAAATACAGGTGTTCACGACACTGTTGTGAATCAGTTATTGGCTAAAATTGATGGTGT 8109 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 | || ||||||||||||||||| ||||| ||||| || || Sbjct 8110 AGAACAGCTGAATAATATTTTAGTCATTGGTATGACCAACAG 8151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397297489951615