Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23131 147 2e-30 seq20950 131 1e-25 seq11882 100 2e-16 >seq23131 Length=98978 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | || ||||| || ||||| |||||||||||||| || || Sbjct 83563 CCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTTTTGAATATTATAATCCGAA 83504 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||||||||||||||||||| |||||||||| |||||||| || || Sbjct 83503 AGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 83444 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| || ||| ||||| |||| | ||||| | | ||||||| Sbjct 83443 ATGCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACT 83384 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || ||||| || | || || |||| |||||| || |||||||||||| || || Sbjct 83383 TCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGATTTGCATACCTCCT 83330 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | ||||||||||| || || ||||||||||| || |||||| Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | |||||||||| || ||||||||| |||||||||| || || || || || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||| || || | |||| | ||| || | | |||||| Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGTATCGCTAGGCTCAACT 83156 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || ||||| || | |||||| |||| ||||| || || ||||||||| || || Sbjct 83155 TCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCATACCTCCT 83102 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | || ||||| || || || |||||||| || |||||||| Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || |||||||||| ||||| |||||| | |||||||| || ||||| || || Sbjct 81907 AGAGTTCTGC-CGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGG 81849 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| |||||||| ||||| ||| | | |||| | ||||| | | || || Sbjct 81848 AATACCTTCTTTATCTTGAATCTTAGCTTTGACGTTTTCAATGGTGTCACTAGGCTCGAC 81789 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || |||| |||||||||||||| ||||| Sbjct 81788 TTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 81741 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| || | || |||||||| || || |||||||||||||| || || | | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| | | ||||| |||||||| |||||| | || | ||| || ||||| || || Sbjct 83731 AAGGTT-CTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGG 83673 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| |||||||| || ||| ||||| |||| | ||||| | | |||||| Sbjct 83672 GATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAAC 83613 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || || | ||| || || | |||||| ||||| ||||||||| || || Sbjct 83612 TTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCATACCTCCT 83558 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | |||||||| | || || |||||||||||||||||||| Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| || ||||| ||||| |||| | ||| || ||||| ||||| Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| || || ||||| |||| | ||||| | | || ||| Sbjct 82303 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACT 82244 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || ||||| |||| ||| || |||| |||||||||||||| |||||| || || Sbjct 82243 TCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATACCTCCT 82190 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | || ||||| ||||| || |||||||| || || ||||| Sbjct 82195 CCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82136 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || |||||||||| ||||| |||||| | || | ||| || || || || || Sbjct 82135 AGAGTTCTGC-CGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGG 82077 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| || || ||||| |||| | || || | | || || Sbjct 82076 AATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGAC 82017 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||| || |||| ||| || |||| || || || |||||||||||| || || Sbjct 82016 TTCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCATACCTCCT 81962 >seq20950 Length=58994 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| || || ||||| ||||| | || || || ||||||||||| || || ||| Sbjct 38333 CCACCGCGTAATCGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTC 38274 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || | ||||| | |||||||| ||| | || | || |||||||| ||||| Sbjct 38273 AATGTTCGGC-CATCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGG 38215 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||||||| || || || ||| | | |||| | || || | | ||| || Sbjct 38214 AATACCCTCTTTGTCTTGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGAC 38155 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||||| |||| ||| || || |||||||| || || ||||||||| Sbjct 38154 TTCTAGAGTAATAGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCATA 38106 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||| ||||||| ||||| ||||| ||||||||||| |||||| Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| |||||||| || ||| | || | || || ||||| || || Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || ||| ||| | | |||| | || || | | || ||| Sbjct 36845 ATGCCTTCTTTGTCCTGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 36786 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || || | ||||||||||||||| ||||| Sbjct 36785 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCAT 36739 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC-ATGTTGCGCTCGTCTT 27096 ||| ||||| | ||||| ||||| ||||||||||| || ||| ||||| | | |||| Sbjct 37860 TACTAAATGAAGGGTAGACTCTTTCTGAATATTGTAATCACTCAATGTT-CTACCATCTT 37802 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | |||||| |||||| |||| | | || ||||| || || | || |||||||| Sbjct 37801 CCAACTGTTTGCCGGCGAAAATTAATCTTTGCTGATCAGGTGGAATGCCTTCTTTATCTT 37742 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || || | |||| | ||||| | | ||||||||| ||||| |||| || Sbjct 37741 GGATTTTAGCCTTAACATTTTCAATCGTGTCGGACGGTTCAACTTCCAGAGTAATAGTTT 37682 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || |||||||| || || ||||||||| Sbjct 37681 TACCAGTTAGAGTTTTAACGAATATTTGCATA 37650 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| || | | |||||||| | ||| ||||| ||||||||||||||||| Sbjct 38562 GCCACCGCGTAATCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCT 38503 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || | ||||| | |||||||||||| | || ||||| || || || || || Sbjct 38502 TAAAGTACGACCATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGG 38443 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| ||||| || |||||| ||| | |||| | || || | | ||| || Sbjct 38442 GATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGAC 38383 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || | ||| || |||| |||||||| || |||||||| Sbjct 38382 TTCTAATGTAATTGTTTTACCAGTCAACGTTTTCACGAAAATTTGCAT 38335 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | ||||| ||| | ||||| ||||||||||| || || || || Sbjct 38105 CCACCACGTAAACGAAGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTT 38046 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||||| ||||| |||| | || || || || || || Sbjct 38045 AAAGTTCGGCCATCTTCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGG 37986 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||| |||||||| ||| || ||||| | | || | |||||| | |||| || || Sbjct 37985 ATACCTTCTTTATCTTGGATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGC-TCTAC 37927 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | ||| |||| ||| || || | ||||| ||||| ||||||||| Sbjct 37926 TTCCAAAGTAATAGTTTTACCAGTTAACGTTTTTACAAAAATTTGCATA 37878 >seq11882 Length=45137 Score = 100 bits (110), Expect = 2e-16 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 27048 AACGTAGAGT--CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTT 27105 |||| ||| | ||||||||||||||||||| | | | | | ||||| | ||||| Sbjct 7310 AACGAAGATTACCTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTT 7251 Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 | |||||| | || | ||| ||||||||||| || | ||| |||||||| || || | Sbjct 7250 TTCCGGCGAAGATCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCT 7191 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||| | |||| | | |||| | ||| ||||| || || || | ||| ||||| | Sbjct 7190 GTTTTACATTTTCAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGA 7131 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || |||||||| Sbjct 7130 GGGTTTTTACGAAAATTTGCAT 7109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424764931247976