Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq23131 140 2e-28 seq20950 120 2e-22 seq19760 89.7 3e-13 >seq23131 Length=98978 Score = 140 bits (154), Expect = 2e-28 Identities = 172/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| || ||| || |||||||| || || || ||| Sbjct 82423 CCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAA 82364 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| |||||||| |||||||| || || || ||||| Sbjct 82363 AGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGG 82304 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CTC 34655 | || || || ||| ||| ||| | ||| || | ||||||| ||||| ||| Sbjct 82303 ATACCTTCTTTATCT-TGAATTTTAGCTTTCACATTTTCAATTGTG---TCGCTAGGCTC 82248 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || |||||||| || |||||||||||||| |||||||| Sbjct 82247 GACTTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 Score = 127 bits (140), Expect = 1e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| | ||| || ||||| |||||||| || ||| Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||||||||||||||| ||||| || || ||||| || ||||| || || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CTC 34655 | || || || ||| ||| ||| | ||| || | ||||||| ||||| ||| Sbjct 82531 ATACCTTCTTTATCT-TGAATTTTAGCTTTCACATTTTCAATTGTG---TCGCTAGGCTC 82476 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| ||||| || ||||| || ||||| ||||| Sbjct 82475 AACTTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 122 bits (134), Expect = 5e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| || ||| || ||||| ||||| || || ||| Sbjct 84019 CCTCCTCTCAAACGAAGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 83960 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| ||||| || |||||||| || || || ||||| Sbjct 83959 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 83900 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCT---CTC 34655 | || || ||||| ||| ||| | || ||| | || ||||| ||| ||| Sbjct 83899 ATACCTTCTTTGTCC-TGAATTTTGGCCTTTACGTTTTCGATGGTGTC---GCTAGGCTC 83844 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| |||||||| ||||| || ||||||||||| Sbjct 83843 GACTTCTAAGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | ||| | || ||||| | ||| ||| |||||||| ||||||||||| Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | |||||||| ||||| ||||| || || ||||| || || || || || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || || ||| ||| ||| | ||| || | || ||||| | | | || | Sbjct 83671 ATACCTTCTTTATCT-TGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGT-TCAA 83614 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||| |||||||| ||||| |||||||| ||||| Sbjct 83613 CTTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || ||||| | || || ||||| ||||| || || ||| Sbjct 81967 CCTCCTCTCAAACGGAGAACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCCGAA 81908 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| |||||||| ||||| || || | ||| || || || || || Sbjct 81907 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGATCGGGAGGA 81848 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||||| | ||| ||| | ||| ||||| ||| || Sbjct 81847 ATACCTTCTTTATCTTGAATCTTA-GCTTTGACGTTTTCAATGGTGTCACTAGGCTCGAC 81789 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| | ||| || |||||||| || |||||||||||||| |||||||| || Sbjct 81788 TTCGAGGGTGATGGTTTTACCAGTCAACGTTTTCACAAAGATCTGCATTTT 81738 Score = 105 bits (116), Expect = 4e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| | ||| || |||||||||||||| || ||| Sbjct 83335 CCTCCTCTCAAACGGAGAACCAAATGTAAAGTCGATTCTTTTTGAATGTTATAGTCGGAA 83276 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| |||||||| || || | ||| || ||||| || || Sbjct 83275 AGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAAATGAGACGTTGCTGGTCGGGAGGA 83216 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT---CTCC 34656 | || || || ||| ||| || |||| | ||| || ||||| ||| Sbjct 83215 ATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTTTCAATAGT---ATCGCTAGGCTCA 83159 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || ||||| ||||| || ||||| || ||||| ||||| Sbjct 83158 ACTTCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 83109 Score = 104 bits (114), Expect = 1e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| | ||| || ||||| |||||||| || ||| Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||||||||||||||| ||||| || || ||||| || ||||| || || Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT---CTC 34655 | || || || ||| ||| ||| | || || | || ||| ||||| ||| Sbjct 82759 ATACCTTCTTTATCT-TGAATTTTAGCCTTGACATTTTCGATGGTG---TCGCTAGGCTC 82704 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || || ||||| || ||||||||||| Sbjct 82703 GACTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | |||||||| || || || ||||| ||||| || || ||| Sbjct 83107 CCTCCTCTCAAACGGAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAA 83048 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| ||||| || |||||||| || || || ||||| Sbjct 83047 AGAGTTCTACCATCTTCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGG 82988 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCT---CTC 34655 | || || || ||| ||| ||| | || || | || ||||| ||| ||| Sbjct 82987 ATACCTTCTTTATCT-TGAATTTTAGCCTTGACATTTTCGATGGTGTC---GCTAGGCTC 82932 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || || || ||||| || ||||||||||| Sbjct 82931 GACTTCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 >seq20950 Length=58994 Score = 120 bits (132), Expect = 2e-22 Identities = 159/214 (74%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTCGCTCGTCTT 34555 |||| ||| ||||| || |||||||||||||||| || ||| ||||| | |||| Sbjct 38087 ACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAA--GTTCGGCCATCTT 38030 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 | | |||||| |||||||| ||||| || || ||||| || || | || || || ||| Sbjct 38029 CTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTT 37970 Query 34616 TGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | ||| ||| | || ||||| | ||||| ||||||| || || | Sbjct 37969 GGAT-TTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCT--ACTTCCAAAGTAATAG 37913 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||||||||||| |||||||| ||||| Sbjct 37912 TTTTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 || || || ||||| |||||| ||||||||||| |||||||| | |||||| | Sbjct 38321 CGTAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCACTCAATGTTCGGCCA 38262 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| || || ||||| || ||||| || ||||| | ||||| ||| Sbjct 38261 TCTTCCAATTGTTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGAATACCCTCTTTG 38202 Query 34612 TCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| || ||| | ||| ||| | ||| || || || ||||| | || || Sbjct 38201 TCT-TGTATTTTAGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACTTCTAGAGTAAT 38143 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||||||||| ||||| || ||||| ||||| Sbjct 38142 AGTTTTACCGGTTAGAGTTTTTACGAAAATTTGCAT 38107 Score = 102 bits (112), Expect = 5e-17 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | || ||||| || || ||| || ||||| || ||||| | ||||| || Sbjct 36956 AGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGT--TC 36899 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | ||||||| || ||||| || || || || || || || || || || || | || | Sbjct 36898 GGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTT 36839 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACG 34665 | ||||| ||| ||| | ||||||| | || || || ||| ||||||| | Sbjct 36838 CTTTGTCC-TGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAG 36780 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || |||||||| ||||| ||||||||||| |||||||| |||| Sbjct 36779 GTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCATTTTGA 36734 >seq19760 Length=34946 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || || || ||||| | ||| || |||||||| || ||||||||| Sbjct 26230 CCACCTCTTAATCGTAATACTAAATGCAAAGTTGATTCTTTTTGAATATTGTAATCTGAA 26171 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||||| | ||||| |||||||| |||||||| || | ||| ||||| || || || Sbjct 26170 AGAGTTCGCCCATCTTCTAGTTGTTTTCCGGCAAAAATCAGACGTTGTTGATCAGGGGG 26112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314604082196459