Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23131 140 8e-28 seq11882 131 4e-25 seq20950 127 5e-24 >seq23131 Length=98978 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || | ||| | || || ||||| || ||||| ||||| | ||| || Sbjct 84242 ACGAAGTCGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGT 84183 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| |||||||| ||||| || || ||||| || |||||||||| ||| Sbjct 84182 TCGACCATCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCC 84123 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || || ||||||||||| |||||| || || ||||| Sbjct 84122 TTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAG 84063 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || | || || || || | ||||| Sbjct 84062 AGTGATGGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||||||||| || |||| ||| || || || ||||| || || || || Sbjct 81937 GTTGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 81878 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || ||||| || || ||||||| ||||| || || || ||||| ||| Sbjct 81877 GCGAAGATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 81818 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| ||||||||| || || ||||| ||||| || || || || | || Sbjct 81817 ACGTTTTCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGGTTTTACCAGTCAACGTT 81758 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | ||||||||| Sbjct 81757 TTCACAAAGATCTGCATTTT 81738 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||||||||||||||| |||| ||| || || || ||||| || || || || Sbjct 82849 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82790 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | ||||| ||||| ||||||| ||||| || || || || || || Sbjct 82789 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTG 82730 Query 211038 ACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||||||||| ||| || || || | ||||| |||||||| || | | Sbjct 82729 ACATTTTCGATGGTGTC---GCTAGGCTCGACTTCTAATGTGATTGTCTTTCCAGTCAAA 82673 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | |||||| Sbjct 82672 GTTTTAACGAAAATCTGCAT 82653 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| ||||| |||||||||||||| || |||| ||| || || |||||| Sbjct 84004 AGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83945 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | ||||| || ||||| || | ||||| |||||| Sbjct 83944 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTCC 83885 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || || ||||||||||||||||| ||| || || || | ||||| Sbjct 83884 TGAATTTTGGCCTTTACGTTTTCGATGGTGTC---GCTAGGCTCGACTTCTAAGGTGATG 83828 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||| || || || | |||||| Sbjct 83827 GTTTTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| || |||||||| | | ||| || |||||||| ||||| || || Sbjct 83762 AGTTGACTCTTTTTGAATATTATAATCTGATAAGGTTCTACCATCTTCAAGCTGTTTTCC 83703 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | ||||| || || ||||| | ||||| || || || || || ||| Sbjct 83702 GGCGAAGATCAAACGTTGCTGATCGGGAGGGATACCTTCTTTATCTTGAATTTTGGCTTT 83643 Query 211037 CACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 ||| |||||||| ||||| ||| |||||| || || || || || ||||| || | Sbjct 83642 CACATTTTCGATCGTGTC---GCTAGGTTCAACTTCAAGCGTAATGGTTTTTCCGGTTAA 83586 Query 211094 AGTCTTTACAAACACCTGCAT 211114 ||| || ||||| | ||||| Sbjct 83585 AGTTTTAACAAAAATTTGCAT 83565 Score = 123 bits (136), Expect = 6e-23 Identities = 148/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||||||||||||||| |||| ||| || || || ||||| || || || || Sbjct 82165 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 82106 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | ||||| ||||| ||||||| |||||||| || || || || |||| Sbjct 82105 GCGAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTAGCTTTC 82046 Query 211038 ACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| ||||| || ||| || || || | ||||| || || || || | Sbjct 82045 ACATTTTCAATGGTATC---GCTAGGCTCGACTTCTAAGGTGATAGTTTTACCAGTCAAG 81989 Query 211095 GTCTTTACAAACACCTGCAT 211114 |||||||| || | ||||| Sbjct 81988 GTCTTTACGAAGATTTGCAT 81969 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||||||||||||||| |||| ||| || || || ||||| || || || || Sbjct 82621 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82562 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | ||||| ||||| ||||||| ||||| || || || || || |||| Sbjct 82561 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTC 82502 Query 211038 ACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || ||||| ||| ||||| || || ||||| || || || || | Sbjct 82501 ACATTTTCAATTGTGTC---GCTAGGCTCAACTTCAAGGGTGATGGTTTTGCCGGTCAAG 82445 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 82444 GTTTTGACGAAAATTTGCAT 82425 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| || || |||||||||||||| || |||| ||| || || |||||| Sbjct 83092 AGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83033 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | ||||| || ||||| || | ||||| || || Sbjct 83032 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTATCT 82973 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || || || || || |||||||||||||| ||| || || || | ||||| Sbjct 82972 TGAATTTTAGCCTTGACATTTTCGATGGTGTC---GCTAGGCTCGACTTCTAATGTGATT 82916 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || | ||| || || || | |||||| Sbjct 82915 GTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 111 bits (122), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || |||||||| |||||||| || | ||| || || || ||||| || ||||| || Sbjct 83306 AGTCGATTCTTTTTGAATGTTATAGTCGGAAAGAGTTCTACCGTCTTCGAGTTGCTTACC 83247 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||||| || || ||||| ||||| ||||||| ||||| || || ||||| || || Sbjct 83246 GGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTTATCTTGGATTTTAGCCTT 83187 Query 211037 CACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || ||||| || || || ||| ||||| ||||||||||| || || || || | Sbjct 83186 TACATTTTCAATAGTATC---GCTAGGCTCAACTTCGAGAGTGATGGTTTTGCCGGTCAA 83130 Query 211094 AGTCTTTACAAACACCTGCAT 211114 || || || || | ||||| Sbjct 83129 GGTTTTGACGAAAATTTGCAT 83109 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||| |||||||| || || || |||| ||| || || |||||| Sbjct 82408 AGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTTCTACCATCT 82349 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | ||||| || || || || | ||||| || || Sbjct 82348 TCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGGATACCTTCTTTATCT 82289 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 || || || |||||| ||||| || ||||| ||| || || ||||||||||| Sbjct 82288 TGAATTTTAGCTTTCACATTTTCAATTGTGTC---GCTAGGCTCGACTTCGAGAGTGATA 82232 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | || || ||||| | |||||| Sbjct 82231 GTTTTACCAGTCAACGTTTTCACAAAGATCTGCAT 82197 >seq11882 Length=45137 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || || || |||| | ||||||||||||||||| ||| || || ||||||| Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | |||||||| || || |||| ||||| || || || || || ||||| || |||| Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || | || || ||| || ||||| ||||| || || |||||||| || ||||| | Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 211105 ACACCTGCAT 211114 | | ||||| Sbjct 7118 AAATTTGCAT 7109 >seq20950 Length=58994 Score = 127 bits (140), Expect = 5e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||||| || ||||| || |||||||| | ||| || | |||||||||| || Sbjct 38309 TGAAGAGTGGATTCCTTTTGAATATTATAATCACTCAA-TGTTCGGCCATCTTCCAATTG 38251 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | |||||||| ||||| |||| || || ||||| || || || Sbjct 38250 TTTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGAATACCCTCTTTGTCTTGTATTTT 38191 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| |||||||| || || ||||| ||| || || ||||| || || || || || Sbjct 38190 AGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACTTCTAGAGTAATAGTTTTACCGGT 38131 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || | ||||| Sbjct 38130 TAGAGTTTTTACGAAAATTTGCAT 38107 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTG 210970 || || || |||||||| || || || ||||| | ||| | || || ||||||||||| Sbjct 36941 TGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGG-CCGTCTTCCAGCTG 36883 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | ||||| || |||||||||| ||||| |||||||| || || Sbjct 36882 TTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAATTTT 36823 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||||||||| || || || || || || | ||||| || || || || Sbjct 36822 GGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGT 36763 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | ||| || ||||| | ||||||||| Sbjct 36762 TAAAGTTTTCACAAAGATCTGCATTTT 36736 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || |||||||| || |||||||| ||||||||||| | || | |||||| Sbjct 38090 AGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCT 38031 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || ||||| || || || | ||||| ||||| || || | ||||| || || Sbjct 38030 TCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCT 37971 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||||||| ||||| ||||| || || || || | ||| || || Sbjct 37970 TGGATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTT 37911 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || |||||||| | ||||| Sbjct 37910 TTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||||| |||||| || || || || || | || | || Sbjct 38550 TCTAAGAACCAAATGAAGAGTACTCTCTTTCTGAATATTGTAGTCGCTTAAAGTACGACC 38491 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || || |||||||| || ||||| ||||| || || | ||||| || Sbjct 38490 ATCTTCCAATTGTTTACCGGCGAAGATTAGACGTTGCTGGTCGGGTGGGATACCTTCTTT 38431 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| ||| || ||||||||||| ||||| ||| || || | || || Sbjct 38430 GTCTTGAATCTTGGCTTTAACATTTTCGATGGTATCAGATGGTTCGACTTCTAATGTAAT 38371 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || | || || || || | |||||| Sbjct 38370 TGTTTTACCAGTCAACGTTTTCACGAAAATTTGCATT 38334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158666009947895