Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq23131 113 4e-20 seq20950 84.2 2e-11 >seq23131 Length=98978 Score = 113 bits (124), Expect = 4e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||||||||||| || | |||||||| || ||| ||||||| Sbjct 82438 ACGAAAATTTG--CATACCTCCTCTTAAACGAAGGACCAAATGCAGGGTGGATTCTTTTT 82381 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || | ||| |||| | || ||||| ||||| || ||||| || | || Sbjct 82380 GAATATTGTAGTCCGAAAGAGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATTAAAC 82321 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | ||||| |||| || | | ||||| || ||||| ||| | | | | | Sbjct 82320 GTTGCTGATCGGGCGGGATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTG 82261 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | ||||| | ||| || || | |||||| |||| || |||| |||||| |||||||| | Sbjct 82260 TGTCGCTAGGCTCGACTTCGAGAGTGATAGTTTTACCAGTCAACGTTTTCACAAAGATCT 82201 Query 39281 GCAT 39284 |||| Sbjct 82200 GCAT 82197 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | |||||||| | |||| |||||||| || ||||| || | | Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| ||||| ||||| || || || || | ||| |||||||||| || Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| ||| | | | | || ||||| | ||| || Sbjct 82531 ATACCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAACT 82472 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || |||| ||||| || || |||||||| Sbjct 82471 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| || | |||||||| | |||| |||||||| || ||||| || | | Sbjct 82879 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82820 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| ||||| ||||| || || || || | ||| |||||||||| || Sbjct 82819 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82760 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| |||| | | | || ||||| | ||| || Sbjct 82759 ATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACT 82700 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| | ||||| |||| |||||||| || || ||||| Sbjct 82699 TCTAATGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82653 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||||||||||| || | || ||||| | || ||||| Sbjct 83580 TAACAAAAATTTG--CATACCTCCTCTTAAACGAAGAACTAAATGCAAGGTAGATTCTTT 83523 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||||||||| | ||| || || | || || |||||||| || || || || || Sbjct 83522 TTGAATATTATAATCCGAAAGAGTACGACCATCTTCGAGCTGTTTACCGGCGAAAATGAG 83463 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 ||| || || || | || | || ||||| || ||||| ||| | | | | Sbjct 83462 ACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGAT 83403 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||| ||||| | || || || | ||||| | ||||| |||| |||||||| ||||| Sbjct 83402 CGTGTCGCTAGGTTCAACTTCAAGAGTGATTGTCTTTCCAGTCAAAGTTTTAACGAAGAT 83343 Query 39279 TTGCAT 39284 |||||| Sbjct 83342 TTGCAT 83337 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| || ||||||| || ||||||||| ||||||||||| | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | |||| | || ||||||||||| || || || || | ||| ||||| |||| || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| ||| | | | | ||| ||||| | || || Sbjct 83671 ATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCTAGGTTCAACT 83612 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || ||||||| || | ||||||||||| |||||||| Sbjct 83611 TCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | || ||||| | |||| |||||||| || ||||| || | | Sbjct 82195 CCTCCTCTCAAACGGAGAACTAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82136 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| |||| || || ||||| || || || || | ||| |||||||| | || Sbjct 82135 AGAGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGGA 82076 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || || || ||||| ||| | | | | |||||||| | ||| || Sbjct 82075 ATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGACT 82016 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| |||| || |||| || || || ||||||||||| Sbjct 82015 TCTAAGGTGATAGTTTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 81969 >seq20950 Length=58994 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 || ||||| || || ||||| || |||||||||||| | ||||| |||| || Sbjct 37175 ACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCT 37116 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 | ||||| || || || || | || |||||||| |||||| | | ||||||||| Sbjct 37115 AATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG-ATTCCTTCTTTGTCCTG 37057 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| ||| | || | | || ||| | ||| || |||| || ||| |||| Sbjct 37056 AATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTT 36997 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| |||||| ||||| |||||||| Sbjct 36996 ACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429374292248099