Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq23131 143 6e-29 seq20950 136 9e-27 seq11882 122 2e-22 seq19760 89.7 1e-12 seq27505 84.2 5e-11 >seq23131 Length=98978 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| || || || | | |||||| || ||||| || || || || Sbjct 82849 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82790 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | ||||| |||||||| ||||||||||| || ||||| || || ||| Sbjct 82789 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTG 82730 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||||||||| | || || ||||| ||||| ||||| || ||||||||| Sbjct 82729 ACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTCTTTCCAGTCAAAGTT 82670 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 82669 TTAACGAAAATCTGCAT 82653 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || || ||||||||||||| ||||| || | | |||||| |||||| Sbjct 83092 AGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83033 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || | ||||| || || ||||| |||||||| || ||| Sbjct 83032 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTATCT 82973 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| |||||||||||| | || || ||||| ||||| ||| Sbjct 82972 TGAATTTTAGCCTTGACATTTTCGATGGTGTCGCTAGGCTCGACTTCTAATGTGATTGTC 82913 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | ||| | ||||| Sbjct 82912 TTTCCAGTCAAAGTTTTAACGAAAATCTGCAT 82881 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| || || || | | |||||| || ||||| || || || || Sbjct 82165 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 82106 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | ||||| ||||| || |||||||||||||| ||||| || ||| || || Sbjct 82105 GCGAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGAAT-TTTAGCTTT 82047 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| ||| ||||| || | || || ||||| ||||| || || || ||||| || Sbjct 82046 CACATTTTCAATGGTATCGCTAGGCTCGACTTCTAAGGTGATAGTTTTACCAGTCAAGGT 81987 Query 225696 TTTTATGAACACTTGCAT 225713 |||| ||| | |||||| Sbjct 81986 CTTTACGAAGATTTGCAT 81969 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | | ||| | |||||||| ||||| || || Sbjct 83533 GTAGATTCTTTTTGAATATTATAATCCGAAAGAGTACGACCATCTTCGAGCTGTTTACCG 83474 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT- 225635 ||||| || || |||||||| || || ||||| ||||| || ||||| || ||| |||| Sbjct 83473 GCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGAAT-TTTGGCTTT 83415 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| |||||| ||||| | ||| || || | ||||| ||||| || |||||||| Sbjct 83414 CACATTTTCGATCGTGTCGCTAGGTTCAACTTCAAGAGTGATTGTCTTTCCAGTCAAAGT 83355 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | |||||| Sbjct 83354 TTTAACGAAGATTTGCAT 83337 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || |||||||||||||||| ||||| || | | |||||| |||||| Sbjct 84004 AGGACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTACCATCT 83945 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || | ||||| || || ||||| |||||||| ||||| Sbjct 83944 TCGAGTTGTTTTCCGGCGAAAATTAAACGTTGCTGATCAGGCGGGATACCTTCTTTGTCC 83885 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || |||||||||||| | || || ||||| ||||| || Sbjct 83884 TGAATTTTGGCCTTTACGTTTTCGATGGTGTCGCTAGGCTCGACTTCTAAGGTGATGGTT 83825 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| | ||| | ||||| Sbjct 83824 TTGCCGGTTAAAGTTTTAACGAAAATCTGCAT 83793 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||||||||||| || || || | | |||||| || ||||| || || || || Sbjct 82621 GTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCAAGTTGTTTTCCG 82562 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | ||||| |||||||| ||||||||||| || ||||| || ||| || || Sbjct 82561 GCGAAGATCAAACGTTGCTGGTCGGGAGGAATACCTTCTTTATCTTGAAT-TTTAGCTTT 82503 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| ||| || ||||| | || || || | ||||| || ||||| ||||| || Sbjct 82502 CACATTTTCAATTGTGTCGCTAGGCTCAACTTCAAGGGTGATGGTTTTGCCGGTCAAGGT 82443 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | |||||| Sbjct 82442 TTTGACGAAAATTTGCAT 82425 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | || || |||| | |||||| || ||||| || ||||| || Sbjct 83306 AGTCGATTCTTTTTGAATGTTATAGTCGGAAAGAGTTCTACCGTCTTCGAGTTGCTTACC 83247 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||| || || ||||| |||||||| ||||| ||||| || |||||||| || ||| Sbjct 83246 GGCGAAAATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTTATCTTGGATTTTAGCCTT 83187 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || | || || || | ||||| || ||||| ||||| || Sbjct 83186 TACATTTTCAATAGTATCGCTAGGCTCAACTTCGAGAGTGATGGTTTTGCCGGTCAAGGT 83127 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | |||||| Sbjct 83126 TTTGACGAAAATTTGCAT 83109 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||||| ||||| || | | |||||| || ||||| || || || || Sbjct 81937 GTTGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTGTTTTCCG 81878 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || Sbjct 81877 GCGAAGATGAGACGTTGCTGATCGGGAGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 81818 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| |||||||| | || || || | ||||| || || || ||||| ||| Sbjct 81817 ACGTTTTCAATGGTGTCACTAGGCTCGACTTCGAGGGTGATGGTTTTACCAGTCAACGTT 81758 Query 225697 TTTATGAACACTTGCATTTT 225716 || | || | |||||||| Sbjct 81757 TTCACAAAGATCTGCATTTT 81738 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || |||||||||||||| | |||||| || | | |||||| |||||| Sbjct 82408 AGGACCAAATGCAGGGTGGATTCTTTTTGAATATTGTAGTCCGAAAGAGTTCTACCATCT 82349 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || || || | ||||| || |||||||| |||||||| || ||| Sbjct 82348 TCAAGTTGTTTTCCGGCAAAAATTAAACGTTGCTGATCGGGCGGGATACCTTCTTTATCT 82289 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || |||||| ||| || ||||| | || || || | ||||| || Sbjct 82288 TGAAT-TTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCGACTTCGAGAGTGATAGT 82230 Query 225681 CTTGCCCGTCAAAGTTTT 225698 || || ||||| ||||| Sbjct 82229 TTTACCAGTCAACGTTTT 82212 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| | || | ||| | || |||||||| || | |||||||| | | ||| Sbjct 84242 ACGAAGTCGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAAAGAGT 84183 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||||| || ||||| || || ||||| || || || ||||| || Sbjct 84182 TCGACCATCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGAATTCC 84123 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || || ||| || |||||| ||||| | || || || | Sbjct 84122 TTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGACTTCGAG 84063 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || || ||||| | ||| | |||||| Sbjct 84062 AGTGATGGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 >seq20950 Length=58994 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| ||||| | ||| ||||| ||| |||| |||||||| | || Sbjct 38309 TGAAGAGTGGATTCCTTTTGAATATTATAATCACTCAATGTTCGGCCATCTTCCAATTGT 38250 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| | ||||||||| || ||||||||||| || |||||||| || ||| Sbjct 38249 TTACCAGCGAAGATTAATCGTTGTTGATCAGGCGGAATACCCTCTTTGTCTTGTAT-TTT 38191 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || ||| || || || || | ||| || |||| || || || || || || Sbjct 38190 AGCTTTTACGTTTTCAATCGTATCAGATGGTTCGACTTCTAGAGTAATAGTTTTACCGGT 38131 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| ||| | |||||| Sbjct 38130 TAGAGTTTTTACGAAAATTTGCAT 38107 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | |||||||||| |||||||| || ||||| ||||| Sbjct 36941 TGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTCAAAGTTCGGCCGTCTTCCAGCTGT 36882 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| | |||||| || || || ||||| ||||| ||||| || || ||| Sbjct 36881 TTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCCTGAAT-TTT 36823 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || |||||| || || || | || || || || ||||| || || || || Sbjct 36822 GGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAGGTGATAGTTTTACCAGT 36763 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| | || | |||||||| Sbjct 36762 TAAAGTTTTCACAAAGATCTGCATTTT 36736 Score = 125 bits (138), Expect = 2e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || ||||| ||||||||||| | || ||||| ||||||| |||||| Sbjct 38090 AGTACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCT 38031 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || || || || || | |||||| |||||||| || |||||||| || ||| Sbjct 38030 TCTAATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCT 37971 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || ||||| ||||| ||||| || | || || || || || || || Sbjct 37970 TGGAT-TTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGT 37912 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||||| || | |||||| Sbjct 37911 TTTACCAGTTAACGTTTTTACAAAAATTTGCAT 37879 >seq11882 Length=45137 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | |||||| || | || || || |||||||| | ||| || || ||||||| Sbjct 7298 CTTTTTGAATATTGTAGTCCGATAAGGTCCTTCCATCTTCCAACTGTTTTCCGGCGAAGA 7239 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | |||||||| || || ||||||||||| || ||||| || || || || ||| || Sbjct 7238 TCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTCTGTTTTACATTTT 7179 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 | || | ||||| | ||| || || | ||||| || || ||||| | ||||||| || Sbjct 7178 CAATCGAATCTGAAGGTTCGACTTCGAGGGTGATTGTTTTACCCGTGAGGGTTTTTACGA 7119 Query 225704 ACACTTGCAT 225713 | | |||||| Sbjct 7118 AAATTTGCAT 7109 >seq19760 Length=34946 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||| ||||||||||| | ||||||||| | | ||||| |||||||||||| || || || Sbjct 26201 AGTTGATTCTTTTTGAATATTGTAATCTGAAAGAGTTCGCCCATCTTCTAGTTGTTTTCC 26142 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || || || |||||||| || || ||||||||| Sbjct 26141 GGCAAAAATCAGACGTTGTTGATCAGGGGGAATACCT 26105 >seq27505 Length=23419 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||||||||| ||||||| || ||| Sbjct 2557 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATTCCCATTTCCTAT 2616 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCA 370765 ||||| |||||| | |||| ||||| ||||| Sbjct 2617 TGGATTAAAAAAATTTATATTTAAATTATTATCA 2650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192031215269762