Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq20950 91.5 1e-13 seq23131 84.2 2e-11 seq19760 82.4 6e-11 >seq20950 Length=58994 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 ||| |||||||| |||||||| |||||| || |||| | ||||| |||||||| || Sbjct 37164 AGTAGATTCTTTCTGAATATTATAATCGCTCAAAGTTCGGCCGTCTTCTAATTGTTTTCC 37105 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 || | || | | ||| ||||| || | ||||||||||| |||||| ||| Sbjct 37104 GGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTGAATTTTAGCTTT 37045 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 ||| | | | || || | | | | ||| | ||||||||||| || ||||| || Sbjct 37044 CACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTACCAGTCAACGT 36985 Query 101221 TTTAATAAAAATTTGCAT 101238 ||| | |||||||||||| Sbjct 36984 TTTTACAAAAATTTGCAT 36967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | ||| |||||||| |||||||| |||||| | |||| | ||||| Sbjct 37632 CACCAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTTAAAGTTCGGCCGTCTTC 37573 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||||||||| || || | || | | ||| ||||| || | ||||||||||| Sbjct 37572 CAATTGTTTTCCAGCGAAAATTAATCGTTGCTGGTCAGGTGGGATTCCTTCTTTGTCCTG 37513 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT---GTTTCGACGGTAATAGT 101205 |||||| ||| || | | | ||| || ||||| | ||| | |||||||| Sbjct 37512 AATTTTAGCTTTAACGTTTTCAATCGTGTC---GGACGGTTCGACTTCCAGAGTAATAGT 37456 Query 101206 TTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || || |||||||| | ||||||||||| Sbjct 37455 CTTACCAGTTAATGTTTTCACGAAAATTTGCAT 37423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| || | ||| |||||||||||||| || ||||| | |||| | |||||| Sbjct 38087 ACCAGATGAAGAGTAGATTCTTTTTGAATGTTATAATCACTTAAAGTTCGGCCATCTTCT 38028 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 ||||||||||| ||| | || | | ||| ||||| || | |||||||| || Sbjct 38027 AATTGTTTGCCGGCAAAAATTAATCGTTGCTGGTCGGGTGGGATACCTTCTTTATCTTGG 37968 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 ||||| |||||| | | | || || | | | | ||| | ||||||||||| Sbjct 37967 ATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTACTTCCAAAGTAATAGTTTTA 37908 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || || ||||| | |||||||||||| Sbjct 37907 CCAGTTAACGTTTTTACAAAAATTTGCAT 37879 >seq23131 Length=98978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 ||||||| ||| | || || | || |||||||| |||||||||||||| ||||| | Sbjct 83791 CCGCCTCTCAAACGTAGAACTAAATGTAAAGTTGACTCTTTTTGAATATTATAATCTGAT 83732 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | |||||| | ||||| || || | || | | ||| || || || Sbjct 83731 AAGGTTCTACCATCTTCAAGCTGTTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGG 83672 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||||| || |||||| |||||||| | | ||| || | | ||| Sbjct 83671 ATACCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATCGTGTCGCT--AGGTTCAA 83614 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | ||||| ||||| || || || ||||||| |||||||||||| Sbjct 83613 CTTCAAGCGTAATGGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 83565 >seq19760 Length=34946 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||| ||| || | |||||||||||||||||||||||||||||||| | Sbjct 26230 CCACCTCTTAATCGTAATACTAAATGCAAAGTTGATTCTTTTTGAATATTGTAATCTGAA 26171 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTC 101124 | |||| |||||| | |||||| || ||| | || || | |||||| || Sbjct 26170 AGAGTTCGCCCATCTTCTAGTTGTTTTCCGGCAAAAATCAGACGTTGTTGATC 26118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409497422536257