Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq31824 140 3e-28 seq32043 116 3e-21 seq30072 93.3 4e-14 >seq31824 Length=40797 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || || | ||| ||||||||||| | || |||||||||||| ||||||| ||| ||||| Sbjct 11159 GGATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATG 11218 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 | || |||||||||||||| |||| ||||| | | || ||||| | | | || | | Sbjct 11219 GTGATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGT 11278 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || || | |||||||| || ||||||||| || || ||||| ||||| || || || Sbjct 11279 TCGACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAA 11338 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || || | ||| || ||||| ||||||| ||| Sbjct 11339 ATGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCA 11373 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||| ||||| ||| || || || || || ||||| | |||||||| | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| ||||||||||| || ||||| ||||| ||||| | Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 4690 CTACTAATCGGGACCCGAACG-AGCTGGCTTTG-TCTTTAATCCATTTTAATGCCCAGTT 4747 | | | || ||| || | ||| |||| || |||||||| || ||||||| Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGC--ATTTTGATCGGCTATCCATTTCAACGCCCAGTC 11021 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 ||||| |||| || || || || || | ||||| || ||||| Sbjct 11022 TGCTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAATAA 11066 >seq32043 Length=59240 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 ||||| || |||| || || || || || | || |||||||| || ||||| | ||| Sbjct 34692 TTCAACAGGATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATT 34751 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || || | ||||| |||||||| || ||||||| || | ||||| ||||| | | | Sbjct 34752 CTCAATGGTGATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAA 34811 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 || | || |||| ||||| || || || || || ||||||||||| || ||||| Sbjct 34812 GAAACGCTCGACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAAC 34871 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 ||| || ||||| | ||| ||||| || ||||| | ||||| Sbjct 34872 ATGTGAAATAAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGT 34915 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||| |||| ||| ||| || ||||| || |||||||| ||||| |||| Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 ||||||||||||| || || || ||||| ||| || || ||||| || || ||||||| Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 4690 C 4690 | Sbjct 34507 C 34507 >seq30072 Length=2521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 192/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 31709 TCTGCGGGATATGATTTATATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCG 31768 || || ||||| |||||| ||||||| ||| || | ||| |||||| | ||| Sbjct 1453 TCAGCTGGATACGATTTACATAGCGCTTACAACGTGATTGTACGTGCAAAAAGCACAGCA 1394 Query 31769 CTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCT 31828 || | ||||| || ||| || || || | || ||||| | || | ||| Sbjct 1393 TTAATAAAAACAGACATTGCCCTTGAGTTCCCGGAAAACTGTTACGGTCATATTACACCT 1334 Query 31829 AGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGAC 31888 |||||||| || ||| | ||| | ||||| |||| || | |||||||| ||| | ||| Sbjct 1333 AGATCTGGTTTAGCATTGAAAAAGTTTATTCACGTTGGAGGAGGTGTTATTGATGCTGAC 1274 Query 31889 TATAGAGGAAACGTTGGAATTGTGTTGTTTAAT--TTTGGAGAAAAATCATACAGTATAA 31946 ||| |||| || | || ||| | | |||||| || || |||| ||| || ||| Sbjct 1273 TATCGAGGGAATATCGGTATTATTCTTTTTAATCATTCCGAAGTAAATTATATAG--TAA 1216 Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAA 31990 ||| |||||||| |||| ||| | |||| |||||||| || Sbjct 1215 AAATTGGCGATAGAATAGCGCAAATTATTTTTCAAAAAATAAAA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426879287681759