Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq31237 150 2e-31 seq32043 127 3e-24 seq2604 120 4e-22 seq31824 116 5e-21 >seq31237 Length=28651 Score = 150 bits (166), Expect = 2e-31 Identities = 292/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || |||| || |||||| |||| || || ||||||||||| |||||||| | | Sbjct 16102 TCGAATTTTTCACCCCAACAATCAAATAAGCCTGGGCATTCATTAGGGCACATTAGACTC 16161 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||| | || ||||| | ||||||| |||||||||||| | || |||| Sbjct 16162 CATTTTTCATCATTCTCAACTCTTCTCATAAACTCATCAGGTATCCACAACGCGTAAAAT 16221 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | ||| | | | | ||| || || || | |||||| | | || | || || | | Sbjct 16222 AAATCCCTAGCGCGAGTTTCCTCTTTACCAGAATTCTTCCTCAATTCTAAGAAATCAAAA 16281 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| | |||||| ||||||| ||| | || | | | || |||| || || ||||| Sbjct 16282 ATATCCGGATGCCAAGGTTCTAAATAAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCT 16341 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | ||||||||| || ||||| ||||| | | |||||| | | ||| || ||| Sbjct 16342 TGATCAACATATCTGGCTGTATTATTGTAAACGCGAAGCATTGGTACGAGACCATTTGAT 16401 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 || || ||||||| ||| || || | || | || | |||| || || Sbjct 16402 ACACCGTTAGTTCCAGCAATGTAGCTATTTGTAGCTCTGATGCAATGAATGTGTAAACCG 16461 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 |||||||| || || ||||||| ||| || | | |||| || | | ||||| || Sbjct 16462 ATTCCTCCGGCTGATTTGGATATTAAAGCACATCTTGTCAAAGTGTGAAATATACCTTCA 16521 Query 78345 ATACTGTCATC 78355 |||||||| || Sbjct 16522 ATACTGTCTTC 16532 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 ||||||||||||||||||| || || || | ||| | ||||| || || ||||||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||| ||||| || || |||||||||||||| |||||||||| |||||||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 77011 | || |||||||| | ||||||| ||| | ||| | ||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAAGATCTTTCAAATC 14761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||| | ||| || || ||| | ||||||||||| || ||||| ||||| || || Sbjct 16625 CTAGATAATTGCGGACGAGGTGTTGCAGCATTAAATAAGGTTGGAGACGCATGTGTGAAA 16684 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 ||||| || | || |||||| || |||||||| || || || || |||||| Sbjct 16685 TATTTTAACGACATTAAATTGTAAGTCTCAATAGCAGAGTCGATATCGTCGCCATGAATA 16744 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || | | ||| ||||| |||||||| ||||| | ||| || | | || |||||| Sbjct 16745 CCGATAGATACTCGCATTAACATATGTTGAGGACGTTCGACAATACGGTCGTTAATTTTC 16804 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAA 78586 || || || || |||||||| || | ||| Sbjct 16805 AATAAATACGACTTTTCCAAGGTCTAAAA 16833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/193 (72%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 77354 TGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 ||| || || || ||||| |||||||| | || ||| || || ||||| |||||||| Sbjct 15322 TGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTCGCAACTAGCTTCCAA 15381 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || ||||||||||| ||||| ||||| | |||| || || | || ||| || Sbjct 15382 AGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTGAGATTTTTCACTTTC 15441 Query 77474 AAACGGA----TAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAA 77529 || ||| | || ||| |||||| ||| |||| |||||||| ||||| |||| Sbjct 15442 GAATGGAAGCCTCAT-TAA---AATAAACAAATCAGCTAGTCCCTGAATACCAATTCCAA 15497 Query 77530 TAGGTCTATGTCT 77542 | ||||||||||| Sbjct 15498 TGGGTCTATGTCT 15510 >seq32043 Length=59240 Score = 127 bits (140), Expect = 3e-24 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || ||||| ||| || || | ||| ||||||| || | ||||| Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || |||||| |||| ||| || || ||||| || || ||||| | Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC--TTCGTTGTG-TATCCACCGTTGTGCCCAATCAG 48339 || | | ||| ||||| || | || || | | | |||||||| |||||||| | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | || | || ||||||||||| ||||| |||||||| || ||||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAA 34612 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | ||| ||||| || || | ||||||||| || || || | ||| ||||| | Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 ||||| |||||||| ||| |||| || || | | ||||| || | | || || || Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | | ||| ||||| || || ||||| ||| |||||||||||||| |||||| ||| Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 ||| | | |||| | | ||||||| | |||||| ||| ||| Sbjct 34881 AAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATC 34925 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 47838 ATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCC 47897 |||| ||| |||||| ||| |||||||| ||||||||| |||||||||||||| Sbjct 33922 ATAATTCCACTTTTTTTATACTCACCCACTTTTTTCTCGAAGAAATTAGTTTTGCCAGTT 33981 Query 47898 AATGATATATTTTCCATAAAATCAAATGGATT 47929 || |||||||||||||||||||| ||||| || Sbjct 33982 AAGGATATATTTTCCATAAAATCGAATGGGTT 34013 Score = 86.0 bits (94), Expect = 9e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 ||| | ||| || || ||||| ||||| ||||||| | ||| | ||||||||| || | Sbjct 34124 CAGCCGATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCAT 34183 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 ||||||| ||| || || | ||| |||||||| || || ||||| || || Sbjct 34184 GGATACTGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAAT 34243 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 ||| | ||| |||| ||| | | |||||||||||||||||| || ||||| Sbjct 34244 TTCTGTAATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAA 34303 Query 48149 ATCACAATG-AAGACCT 48164 |||| ||| ||| ||| Sbjct 34304 ATCAGTATGCAAGCCCT 34320 >seq2604 Length=35699 Score = 120 bits (132), Expect = 4e-22 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| || || || | | ||||| || ||| ||||| ||||| | |||| Sbjct 27962 TGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAAGAT 27903 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||| |||||||| || |||||||| || |||||||||| || || || | | Sbjct 27902 TCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAAGAAGCGA 27844 Query 77247 -TTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 ||||| | |||||| |||| | ||||| || || | || ||| ||||| | || || Sbjct 27843 GTTTCTTAAACCATGCTGTT-TTATTTTTTCCTTCAACGATGCCCAGTCCCATAAATTTG 27785 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||| ||||| ||| | |||||| |||| ||| Sbjct 27784 TTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 ||||||| |||||| ||||| || || | |||||| || || || | || |||| | | Sbjct 25780 CTAAATATTTTTTTGGTTTCTTTATGCAAATTAGAAACGGCAATACGAGCGGCTAATACA 25721 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||||||||| | || || | || || |||| || || | | ||||||| Sbjct 25720 GCATAATCAGGATGCCGAGTTGTCATCGAAGCCGCAGTTTCAGCTGCGAGATTATCTAAT 25661 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGATTTTGAC 78919 || ||||| ||||| ||| | ||| ||| ||||||||||||| || || | ||| Sbjct 25660 TCCATAGTAGTGACGCCAGGAAATAAACCTCGAATAACTTTCATCGCAATCTCGAC 25605 Score = 100 bits (110), Expect = 4e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||| | |||||||| ||||| ||||| || || || ||| || | || ||| || ||| Sbjct 26267 GCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGGTT 26208 Query 78465 TCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 |||||||| | || ||||| || | |||||||| || | || |||||||||||||| Sbjct 26207 TCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATATG 26149 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 || || | ||| || |||| ||||||||||| || || || || ||||| || Sbjct 26148 TTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||||||||||||| ||| | ||||| |||| ||| || ||||| | Sbjct 26874 TTCAAATTCATCTCCCCAACAATCCGAGAGACCAGGACATTGATTAGGACACATAAGACT 26815 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| | | |||| || || || ||| || ||| || | ||||| || ||| Sbjct 26814 CCATTTTTCTTCTTTCTCTACACGCCGCATGAACTCATCTGGGACCCATAATGCGTAAAA 26755 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 || |||||| | ||| |||||||| || ||||| ||| | ||| | ||| || | Sbjct 26754 TAAATCTCGAGCTCTGATTTCTTCATGGCCGGTATTTTTTCGTAAATCTAAAAATTCGAA 26695 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||||| | ||||||||||| ||||| || || | | ||||||| || Sbjct 26694 TATATCCGCGTGCCATGGTTCAAGATAAATAGCGAAAGCTCCAGGGCG 26647 >seq31824 Length=40797 Score = 116 bits (128), Expect = 5e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| ||| ||||| || || || | || ||||| || || | || | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||| |||||||||||| || ||||| ||||| ||||||| Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339 || ||| ||| || || | | || || | | |||||| ||||| || | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 | ||| |||| ||||||||||| ||||| |||||||| || Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 113 bits (124), Expect = 6e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 ||| |||| |||||| ||||| || | ||||||||||| || || | ||| || || | Sbjct 11161 ATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGT 11220 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||||||||||||| |||| ||||| | ||||| || || | | || ||||| Sbjct 11221 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC 11280 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | | ||| || || || || || ||| |||||| |||||||| || || ||| ||| Sbjct 11281 GACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAAT 11340 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || | | |||| | | | ||||| | ||| || ||| ||| Sbjct 11341 GAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 47985 AATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCC 48044 ||||| ||||| ||||||||||||| | |||||||| || | | ||||||| ||| Sbjct 10597 AATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGCA 10656 Query 48045 TCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT--CCACTATTATCGATGTTACCGTTT 48102 || || | ||| |||||||| ||| | ||||| | | | | | ||| || | | || Sbjct 10657 TCGGTCAAAAATTCTTGTTCAATAATAACAGCGTCACGAATGATTTCGGTGATTTC--TT 10714 Query 48103 CCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 | |||| ||| | | ||||||||||||||| ||||| |||||||| Sbjct 10715 CAACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATC 10763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694384654410720