Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq31237 150 3e-31 seq32043 141 1e-28 seq31824 134 2e-26 seq2604 120 4e-22 >seq31237 Length=28651 Score = 150 bits (166), Expect = 3e-31 Identities = 292/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || |||| || |||||| |||| || || || |||||||| || ||||| | | Sbjct 16102 TCGAATTTTTCACCCCAACAATCAAATAAGCCTGGGCATTCATTAGGGCACATTAGACTC 16161 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | |||| | || ||| | | ||||||| |||||||||||| | || |||| Sbjct 16162 CATTTTTCATCATTCTCAACTCTTCTCATAAACTCATCAGGTATCCACAACGCGTAAAAT 16221 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | ||| | | | | ||| || || || | |||||| | | |||| ||| || | | Sbjct 16222 AAATCCCTAGCGCGAGTTTCCTCTTTACCAGAATTCTTCCTCAATTCTAAGAAATCAAAA 16281 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| | |||||| ||||||| ||| | || | | ||||||||| || || ||||| Sbjct 16282 ATATCCGGATGCCAAGGTTCTAAATAAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCT 16341 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||||||||| || ||||| ||||| | | |||||| | | || || ||| Sbjct 16342 TGATCAACATATCTGGCTGTATTATTGTAAACGCGAAGCATTGGTACGAGACCATTTGAT 16401 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 ||| || ||||||| ||| || || || | || | ||| || || Sbjct 16402 ACACCGTTAGTTCCAGCAATGTAGCTATTTGTAGCTCTGATGCAATGAATGTGTAAACCG 16461 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 |||||||| || ||| || |||| |||||| | | |||| |||| | | || || || Sbjct 16462 ATTCCTCCGGCTGATTTGGATATTAAAGCACATCTTGTCAAAGTGTGAAATATACCTTCA 16521 Query 76940 ATACTATCATC 76950 ||||| || || Sbjct 16522 ATACTGTCTTC 16532 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 ||||||||||||||||||| || || || | ||| ||||||| || || ||||||| Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||| ||||| || || |||||||||||||| |||||||||| |||||||| Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 | || |||||||| | ||||||| ||| | ||| | ||| Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAAGATCTTTCAAATC 14761 Score = 109 bits (120), Expect = 8e-19 Identities = 161/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| |||||| | ||| || || || |||||||||| ||| | || ||| || || Sbjct 15307 TCCTTTGCTAACTGGTGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTC 15366 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053 |||||| || || || |||||||||||||| ||||| ||||| | ||||||| || Sbjct 15367 GCAACTAGCTTCCAAAGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTG 15426 Query 76054 CGCTTCAAGACTATCAAAAGGA----TAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 | || ||| || || ||| | || ||| |||||| ||| |||||||||| Sbjct 15427 AGATTTTTCACTTTCGAATGGAAGCCTCAT-TAA---AATAAACAAATCAGCTAGTCCCT 15482 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 ||| ||||| ||||| ||||||||||| ||| || || |||| Sbjct 15483 GAATACCAATTCCAATGGGTCTATGTCTGAGATTAGACTTTGCAGC 15528 >seq32043 Length=59240 Score = 141 bits (156), Expect = 1e-28 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46881 TTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 |||| || |||||| | || ||||| || || | ||||||||| |||||||| | || Sbjct 34692 TTCAACAGGATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATT 34751 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000 ||||| | ||||| |||||||| ||| |||| || |||| || ||||| ||| | | Sbjct 34752 CTCAATGGTGATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAA 34811 Query 47001 AAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 || || || ||| | ||| |||||||| || ||||| ||| ||||||||||| || | Sbjct 34812 GAAACGCTC-GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAA 34870 Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 ||||| |||||| | | |||| || | ||||||| | |||||| ||| ||| Sbjct 34871 CATGTGAAATAAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATC 34925 Score = 140 bits (154), Expect = 5e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || ||||| ||| || || | |||||||||| || | |||| Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||||||||| || |||||| |||| ||| || || ||||| ||||| || || | Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAG 46828 ||| | ||| ||||| || | |||| | || | |||||||| ||||||||| | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | ||| | || ||||||||||| ||||| |||||||| || ||||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAA 34612 Score = 109 bits (120), Expect = 8e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 ||| | ||| || || ||||| |||||||||||||| | ||| | ||||||||| || | Sbjct 34124 CAGCCGATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCAT 34183 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || |||| ||| || || | ||| ||||||||||| || ||||| | || || Sbjct 34184 GGATACTGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAAT 34243 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 ||| | | ||| |||| ||| || | |||||||||||||||||| || ||||| Sbjct 34244 TTCTGTAATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAA 34303 Query 46638 ATCACAATGAAGGCC 46652 |||| ||| | ||| Sbjct 34304 ATCAGTATGCAAGCC 34318 >seq31824 Length=40797 Score = 134 bits (148), Expect = 2e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| || || ||||| || | ||||||||||| ||||| | || || || | Sbjct 11161 ATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGT 11220 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||||||||||||| |||| ||||||| |||||| || ||| | | || ||||| Sbjct 11221 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC 11280 Query 47010 AGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 ||||| ||| || ||||| || || ||| |||||| ||||||||||| || ||| || Sbjct 11281 -GACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAA 11339 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || | | |||| || | | ||||| | ||| || ||| ||| Sbjct 11340 TGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385 Score = 125 bits (138), Expect = 1e-23 Identities = 165/225 (73%), Gaps = 13/225 (6%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||| ||||| || || || | ||||||||| || || | ||| | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||||||||| || || ||| |||||||||||| || ||||| || || || |||| Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA------ATCCACCTTTGA--GCCCA 46823 ||| || ||| || || || | | | |||| ||| ||||| ||| | ||||| Sbjct 10964 CGATAATTCTTTCCCC--AAAT-GTAGCATTTTGATCGGCTATCCA--TTTCAACGCCCA 11018 Query 46824 ATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || || |||| ||||||||||| ||||| |||||||| || Sbjct 11019 GTCTGCTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 107 bits (118), Expect = 3e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 46474 AATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCC 46533 ||||| ||||| |||||||||||||| | |||||||| || | | || |||| ||| Sbjct 10597 AATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGCA 10656 Query 46534 TCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGATATTATCGATGTTACTGTTTC 46592 || || | ||| |||||||||||| | ||||| || ||| || || || | | ||| Sbjct 10657 TCGGTCAAAAATTCTTGTTCAATAATAACAGCGTCACGA-ATGATTTCGGTGATTTCTTC 10715 Query 46593 CTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640 |||| ||| || | ||||||||||||||| ||||| |||||||| Sbjct 10716 AACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATC 10763 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 ||||||||||| ||||| ||||| || |||||||||||| |||| ||| |||||| | Sbjct 11468 ACTTCTTCAGCCGTCCAAAATGAGGCTTCTGCTTTTTTAAACATCGCCCAAATATCATCA 11527 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTT---TTTGCAAGTATAGGTTCCAT 47243 |||| |||||| | || || |||||| |||||| ||| | || ||||||||| Sbjct 11528 TATTTGATCGGCATGATGACGAATCTACGAGGATTTGGCTTT---AATAAAGGTTCCAT 11583 >seq2604 Length=35699 Score = 120 bits (132), Expect = 4e-22 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| || || || | | ||||| || ||| ||||| ||||| | |||| Sbjct 27962 TGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAAGAT 27903 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||| |||||||| || || ||||| || |||||||||| || || || | | Sbjct 27902 TCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAAGAAGCGA 27844 Query 75842 -TTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 ||||| | |||||| |||| | ||||| || || | || ||| ||||| | || || Sbjct 27843 GTTTCTTAAACCATGCTGTT-TTATTTTTTCCTTCAACGATGCCCAGTCCCATAAATTTG 27785 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||| ||||| ||| | |||||| |||| ||| Sbjct 27784 TTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751 Score = 109 bits (120), Expect = 8e-19 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||| | || ||||||||||| ||||||||||| || ||| || | || ||| || ||| Sbjct 26267 GCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGGTT 26208 Query 77060 TCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 |||||| | || || || || || | |||||||| || | || |||||||||||||| Sbjct 26207 TCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATATG 26149 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 || || ||||| || |||| ||||||||||| || || || || ||||| || Sbjct 26148 TTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 ||||||||| |||||| ||||| || || | ||| || ||||| || | ||| |||| | Sbjct 25782 CGCTAAATATTTTTTTGGTTTCTTTATGCAAATTAGAAACGGCAATACGAGCGGCTAATA 25723 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 ||||| |||||||| | || || | || || |||| || || | | |||||| Sbjct 25722 CAGCATAATCAGGATGCCGAGTTGTCATCGAAGCCGCAGTTTCAGCTGCGAGATTATCTA 25663 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 |||| |||||||| || || | ||| ||| ||||||||||||| || || Sbjct 25662 ATTCCATAGTAGTGACGCCAGGAAATAAACCTCGAATAACTTTCATCGCAAT 25611 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||||||||||||| ||| | ||||||||||| ||| |||||||| | Sbjct 26874 TTCAAATTCATCTCCCCAACAATCCGAGAGACCAGGACATTGATTAGGACACATAAGACT 26815 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | | |||| || || || ||| || ||| || | ||||| || ||| Sbjct 26814 CCATTTTTCTTCTTTCTCTACACGCCGCATGAACTCATCTGGGACCCATAATGCGTAAAA 26755 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || |||||| | ||| |||||||| || ||||| ||| | ||||| || || | Sbjct 26754 TAAATCTCGAGCTCTGATTTCTTCATGGCCGGTATTTTTTCGTAAATCTAAAAATTCGAA 26695 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||| | ||||||||||| ||||| || || Sbjct 26694 TATATCCGCGTGCCATGGTTCAAGATAAATAGC 26662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712642783095360