Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27]
32,723 sequences; 304,570,832 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq31237 150 3e-31
seq32043 141 1e-28
seq31824 134 2e-26
seq2604 120 4e-22
>seq31237
Length=28651
Score = 150 bits (166), Expect = 3e-31
Identities = 292/431 (68%), Gaps = 0/431 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|| |||| || |||||| |||| || || || |||||||| || ||||| | |
Sbjct 16102 TCGAATTTTTCACCCCAACAATCAAATAAGCCTGGGCATTCATTAGGGCACATTAGACTC 16161
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| | |||| | || ||| | | ||||||| |||||||||||| | || ||||
Sbjct 16162 CATTTTTCATCATTCTCAACTCTTCTCATAAACTCATCAGGTATCCACAACGCGTAAAAT 16221
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
| ||| | | | | ||| || || || | |||||| | | |||| ||| || | |
Sbjct 16222 AAATCCCTAGCGCGAGTTTCCTCTTTACCAGAATTCTTCCTCAATTCTAAGAAATCAAAA 16281
Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759
||||| | |||||| ||||||| ||| | || | | ||||||||| || || |||||
Sbjct 16282 ATATCCGGATGCCAAGGTTCTAAATAAAGGGCAAAAGCACCCGGTCTCTTGTTGCCTCCT 16341
Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819
||||| | ||||||||| || ||||| ||||| | | |||||| | | || || |||
Sbjct 16342 TGATCAACATATCTGGCTGTATTATTGTAAACGCGAAGCATTGGTACGAGACCATTTGAT 16401
Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879
||| || ||||||| ||| || || || | || | ||| || ||
Sbjct 16402 ACACCGTTAGTTCCAGCAATGTAGCTATTTGTAGCTCTGATGCAATGAATGTGTAAACCG 16461
Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939
|||||||| || ||| || |||| |||||| | | |||| |||| | | || || ||
Sbjct 16462 ATTCCTCCGGCTGATTTGGATATTAAAGCACATCTTGTCAAAGTGTGAAATATACCTTCA 16521
Query 76940 ATACTATCATC 76950
||||| || ||
Sbjct 16522 ATACTGTCTTC 16532
Score = 118 bits (130), Expect = 2e-21
Identities = 124/163 (76%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
||||||||||||||||||| || || || | ||| ||||||| || || |||||||
Sbjct 14599 TCCATCCGTAGAAATGCATCGATGAAAGATTCGCATACGTCGGATCAGCCATGTGAATAT 14658
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| ||| ||||| || || |||||||||||||| |||||||||| ||||||||
Sbjct 14659 TCAAACTTTGAGACTGATCAATAAATGCTCCTCTATCAGCAGCCATTTTTAAAATGGTCT 14718
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606
| || |||||||| | ||||||| ||| | ||| | |||
Sbjct 14719 TCTGCTTGATTTCCCATACAGTTTTGTAAAGATCTTTCAAATC 14761
Score = 109 bits (120), Expect = 8e-19
Identities = 161/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993
||| |||||| | ||| || || || |||||||||| ||| | || ||| || ||
Sbjct 15307 TCCTTTGCTAACTGGTGACCCTTTGTACGTTTCGTAAGGTCCGAATTGTTGAGCAAGCTC 15366
Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053
|||||| || || || |||||||||||||| ||||| ||||| | ||||||| ||
Sbjct 15367 GCAACTAGCTTCCAAAGCACCGTAATAAATAGTTTCAAAAATTTGTATATTAAGCAACTG 15426
Query 76054 CGCTTCAAGACTATCAAAAGGA----TAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109
| || ||| || || ||| | || ||| |||||| ||| ||||||||||
Sbjct 15427 AGATTTTTCACTTTCGAATGGAAGCCTCAT-TAA---AATAAACAAATCAGCTAGTCCCT 15482
Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
||| ||||| ||||| ||||||||||| ||| || || ||||
Sbjct 15483 GAATACCAATTCCAATGGGTCTATGTCTGAGATTAGACTTTGCAGC 15528
>seq32043
Length=59240
Score = 141 bits (156), Expect = 1e-28
Identities = 174/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 46881 TTCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940
|||| || |||||| | || ||||| || || | ||||||||| |||||||| | ||
Sbjct 34692 TTCAACAGGATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATT 34751
Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA 47000
||||| | ||||| |||||||| ||| |||| || |||| || ||||| ||| | |
Sbjct 34752 CTCAATGGTGATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAA 34811
Query 47001 AAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059
|| || || ||| | ||| |||||||| || ||||| ||| ||||||||||| || |
Sbjct 34812 GAAACGCTC-GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAA 34870
Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114
||||| |||||| | | |||| || | ||||||| | |||||| ||| |||
Sbjct 34871 CATGTGAAATAAACTGTCTTTCCTCAGGTTTCAGTTTCTCCCAGTCTCTGAAATC 34925
Score = 140 bits (154), Expect = 5e-28
Identities = 167/226 (74%), Gaps = 3/226 (1%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || ||||| ||| || || | |||||||||| || | ||||
Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||||||||| || |||||| |||| ||| || || ||||| ||||| || || |
Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506
Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAG 46828
||| | ||| ||||| || | |||| | || | |||||||| ||||||||| |
Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566
Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874
| ||| | || ||||||||||| ||||| |||||||| || |||||
Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAA 34612
Score = 109 bits (120), Expect = 8e-19
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
||| | ||| || || ||||| |||||||||||||| | ||| | ||||||||| || |
Sbjct 34124 CAGCCGATCCGCTACAAATTCAATATACGTTTTCATTAATTCGCTATTCATTCCAATCAT 34183
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
|| |||| ||| || || | ||| ||||||||||| || ||||| | || ||
Sbjct 34184 GGATACTGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATCACAACGGCATCACAAATAAT 34243
Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637
||| | | ||| |||| ||| || | |||||||||||||||||| || |||||
Sbjct 34244 TTCTGTAATTTCTTCAACACTGGGTTTTTGAACCAAATGTTTAAACATTAAGCAAGCAAA 34303
Query 46638 ATCACAATGAAGGCC 46652
|||| ||| | |||
Sbjct 34304 ATCAGTATGCAAGCC 34318
>seq31824
Length=40797
Score = 134 bits (148), Expect = 2e-26
Identities = 167/226 (74%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
||| |||| || || ||||| || | ||||||||||| ||||| | || || || |
Sbjct 11161 ATCCTTAATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGT 11220
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| ||||||||||||||| |||| ||||||| |||||| || ||| | | || |||||
Sbjct 11221 GATTTGAAATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTC 11280
Query 47010 AGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068
||||| ||| || ||||| || || ||| |||||| ||||||||||| || ||| ||
Sbjct 11281 -GACAAGATTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAA 11339
Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114
| || | | |||| || | | ||||| | ||| || ||| |||
Sbjct 11340 TGAATTTTCTTTCCTCTGGCTTTAGTTTTTCCCAATCTCTGAAATC 11385
Score = 125 bits (138), Expect = 1e-23
Identities = 165/225 (73%), Gaps = 13/225 (6%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| ||| ||||| || || || | ||||||||| || || | ||| |
Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||||||||| || || ||| |||||||||||| || ||||| || || || ||||
Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963
Query 46772 CGACAAGTCTCTCTCCGTAACTGGCATCATTATGA------ATCCACCTTTGA--GCCCA 46823
||| || ||| || || || | | | |||| ||| ||||| ||| | |||||
Sbjct 10964 CGATAATTCTTTCCCC--AAAT-GTAGCATTTTGATCGGCTATCCA--TTTCAACGCCCA 11018
Query 46824 ATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868
|| || || |||| ||||||||||| ||||| |||||||| ||
Sbjct 11019 GTCTGCTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063
Score = 107 bits (118), Expect = 3e-18
Identities = 126/168 (75%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 46474 AATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCC 46533
||||| ||||| |||||||||||||| | |||||||| || | | || |||| |||
Sbjct 10597 AATTCAATATAAGTTTTCATCATTTCGCTGTTCATTCCAATCATTGATACTGGTAAAGCA 10656
Query 46534 TCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGATATTATCGATGTTACTGTTTC 46592
|| || | ||| |||||||||||| | ||||| || ||| || || || | | |||
Sbjct 10657 TCGGTCAAAAATTCTTGTTCAATAATAACAGCGTCACGA-ATGATTTCGGTGATTTCTTC 10715
Query 46593 CTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640
|||| ||| || | ||||||||||||||| ||||| ||||||||
Sbjct 10716 AACACTCGGTTTTTGAACCAAATGTTTAAACATCAAACACGCAAAATC 10763
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/119 (76%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187
||||||||||| ||||| ||||| || |||||||||||| |||| ||| |||||| |
Sbjct 11468 ACTTCTTCAGCCGTCCAAAATGAGGCTTCTGCTTTTTTAAACATCGCCCAAATATCATCA 11527
Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTT---TTTGCAAGTATAGGTTCCAT 47243
|||| |||||| | || || |||||| |||||| ||| | || |||||||||
Sbjct 11528 TATTTGATCGGCATGATGACGAATCTACGAGGATTTGGCTTT---AATAAAGGTTCCAT 11583
>seq2604
Length=35699
Score = 120 bits (132), Expect = 4e-22
Identities = 158/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| || || || | | ||||| || ||| ||||| ||||| | ||||
Sbjct 27962 TGAAATTCTCCGGATAAAACCCGCCTGGTGTACATGTTAGAAGTATACGGTTCAAAAGAT 27903
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|| || ||||| |||||||| || || ||||| || |||||||||| || || || | |
Sbjct 27902 TCGTTATTTCCTAAAATTTGGGCGGTAGAAGCGGTAGGCATAGGTG-CAAGAAGAAGCGA 27844
Query 75842 -TTTCTGAGACCATG-TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
||||| | |||||| |||| | ||||| || || | || ||| ||||| | || ||
Sbjct 27843 GTTTCTTAAACCATGCTGTT-TTATTTTTTCCTTCAACGATGCCCAGTCCCATAAATTTG 27785
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
|||| ||||| ||| | |||||| |||| |||
Sbjct 27784 TTGGTGTAACATTCCACATATCGTACTGTAAAAT 27751
Score = 109 bits (120), Expect = 8e-19
Identities = 132/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059
||| | || ||||||||||| ||||||||||| || ||| || | || ||| || |||
Sbjct 26267 GCACTGAATAATGTAGGAGAAGCATGAGTGAAATATCGTTCTGATAATAAATTATAGGTT 26208
Query 77060 TCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118
|||||| | || || || || || | |||||||| || | || ||||||||||||||
Sbjct 26207 TCAATAGCCGCATCAATGTCTTCACCG-TGAATTCCAACGGAAACTCGCATCAACATATG 26149
Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175
|| || ||||| || |||| ||||||||||| || || || || ||||| ||
Sbjct 26148 TTGTGGCCGTTCGACTACCTTACCATTTATTTTCAGCAGATACGACTTCTCCAACGT 26092
Score = 98.7 bits (108), Expect = 1e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396
||||||||| |||||| ||||| || || | ||| || ||||| || | ||| |||| |
Sbjct 25782 CGCTAAATATTTTTTTGGTTTCTTTATGCAAATTAGAAACGGCAATACGAGCGGCTAATA 25723
Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456
||||| |||||||| | || || | || || |||| || || | | ||||||
Sbjct 25722 CAGCATAATCAGGATGCCGAGTTGTCATCGAAGCCGCAGTTTCAGCTGCGAGATTATCTA 25663
Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508
|||| |||||||| || || | ||| ||| ||||||||||||| || ||
Sbjct 25662 ATTCCATAGTAGTGACGCCAGGAAATAAACCTCGAATAACTTTCATCGCAAT 25611
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
||||||||||||||||||| ||| | ||||||||||| ||| |||||||| |
Sbjct 26874 TTCAAATTCATCTCCCCAACAATCCGAGAGACCAGGACATTGATTAGGACACATAAGACT 26815
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
||| | | |||| || || || ||| || ||| || | ||||| || |||
Sbjct 26814 CCATTTTTCTTCTTTCTCTACACGCCGCATGAACTCATCTGGGACCCATAATGCGTAAAA 26755
Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698
|| |||||| | ||| |||||||| || ||||| ||| | ||||| || || |
Sbjct 26754 TAAATCTCGAGCTCTGATTTCTTCATGGCCGGTATTTTTTCGTAAATCTAAAAATTCGAA 26695
Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGC 76731
||||| | ||||||||||| ||||| || ||
Sbjct 26694 TATATCCGCGTGCCATGGTTCAAGATAAATAGC 26662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712642783095360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |