Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq32043 125 7e-24 seq31824 95.1 1e-14 >seq32043 Length=59240 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| |||| || |||||||| | |||||||||||| || ||||| | ||| ||||| | Sbjct 34701 ATCTTTTATGTAGGTATCAATCAATAAACTATACATCTCTGAATGCACATTCTCAATGGT 34760 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||||| || || || ||| ||||||| |||| | ||| || || | ||| || | | Sbjct 34761 GATCTGGAATCCGTAGAAAAATCTAGCCTCAGGAACTTGTACTTCTTGAAAGAAACGCTC 34820 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 ||| |||||| || ||||| ||||| ||| ||||| || || | ||||| | || Sbjct 34821 GACTAGATTTTCATTCACAATGCCATCCGAAGCTGCAAAAAATGCTAAAACATGTGAAAT 34880 Query 23952 AAAATGTCTTTCATCAG 23968 ||| |||||||| |||| Sbjct 34881 AAACTGTCTTTCCTCAG 34897 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || |||||||||||| || ||||| || |||||||| |||| ||||| Sbjct 34387 CTTCATCTCTTGATATCAATTCATTACTGAAAGTTAAACCAGGCATTAAGCCTCTTTTTT 34446 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 ||| ||||||||| ||||| || || | ||| ||||| || || ||||| ||||| | Sbjct 34447 TAAGCCAAAATATCGCAGCGAAACTCCCAGTAAAAAAAATTCCTTCGACAGCAGCAAACG 34506 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAG 23710 | | | | | ||||| || ||||| | ||||| ||||| | | ||||| | Sbjct 34507 CGATGATTCTTTCTCCAAAAGTAGCATTTTGATCAGCTATCCACCTCAAAGCCCAATCTG 34566 Query 23711 CCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAA 23757 | || ||| ||||| || ||||| || || || || |||||| Sbjct 34567 CTTTTCTTTTAACACAAGGCATAGTTTCGATAGCATTGAATAGAAAA 34613 >seq31824 Length=40797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || |||||||||||| || || || || ||||| | |||| || | Sbjct 10844 CTTCATCTCTTGAAATCAATTCATTGCTGAAAGTCAACCCAGGCATAAGGCCTCTCTTCT 10903 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| ||| ||||||||||| || || || || ||||| | Sbjct 10904 TTAGCCAAAATATCGCTGCAAAACTTCCAGAAAAGAAAATTCCTTCGACGGCTGCAAATG 10963 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAG 23710 | | || | | |||||||| ||||| | ||| | |||||||| | ||| | | Sbjct 10964 CGATAATTCTTTCCCCAAATGTAGCATTTTGATCGGCTATCCATTTCAACGCCCAGTCTG 11023 Query 23711 CCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 | ||| || ||||| || |||||||| || || || Sbjct 11024 CTTTCCTCTTCACACAAGGCATAGTTTCAATAGCATTGAA 11063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || || || || || | ||| ||||||||||| ||||| | ||| || || | || ||| Sbjct 11168 ATGTAAGTGTCTATCAATAAGCTATACATTTCCGAATGTACATTCTCTATGGTGATTTGA 11227 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || || |||||| |||| ||||||| | || || || | ||| || | || | | | Sbjct 11228 AATCCGTAAAAAAATCTGGCTTCAGGAATCTGGACTTCTTGAAAGAAACGTTCGACAAGA 11287 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGT 23958 |||||||| || ||||| ||| |||||| || || || | || | | || || | | Sbjct 11288 TTTTCGTTCACGATACCGTCAGAAGCAGCGAAAAATGCCAACACGTGTGAAATGAATTTT 11347 Query 23959 CTTTCATCAGTTGATAATTTTTTCCAATC 23987 ||||| || | || ||||| |||||| Sbjct 11348 CTTTCCTCTGGCTTTAGTTTTTCCCAATC 11376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521274691852200