Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ferrisia_20virgata_20[genbank_20GCA_5F900060175.1_202016-03-27] 32,723 sequences; 304,570,832 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23131 93.3 4e-14 seq20950 89.7 5e-13 >seq23131 Length=98978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 41659 ATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTG 41718 ||||| |||| || || || ||||||||||| || || || | |||| ||||| || Sbjct 82172 ATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAAAGAGTTCTGCCGTCTTCGAGTTG 82113 Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| |||| || || ||||| | |||| | ||||| | | ||| ||| Sbjct 82112 TTTTCCGGCGAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTAT-CTTGAATTT 82054 Query 41779 TTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 | |||| || | | || ||||| | ||| || || | || || |||||||| | Sbjct 82053 TAGCTTTCACATTTTCAATGGTATCGCTAGGCTCGACTTCTAAGGTGATAGTTTTACCAG 81994 Query 41838 TCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||||||||| || ||||| Sbjct 81993 TCAAGGTCTTTACGAAGATTTGCAT 81969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || ||||||||||||||||| || || | |||| ||||| ||||| |||||||| Sbjct 83299 TCTTTTTGAATGTTATAGTCGGAAAGAGTTCTACCGTCTTCGAGTTGCTTACCGGCGAAA 83240 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || || || ||||| | |||| || || || || |||||| ||| | Sbjct 83239 ATGAGACGTTGCTGGTCGGGAGGAATGCCTTCTTTATCTTGGATTTTAGCCTTTACATTT 83180 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | ||| ||||| | ||| || || | || || ||||| || |||| || || ||| Sbjct 83179 TCAATAGTATCGCTAGGCTCAACTTCGAGAGTGATGGTTTTGCCGGTCAAGGTTTTGACG 83120 Query 41852 AAAATCTGCAT 41862 ||||| ||||| Sbjct 83119 AAAATTTGCAT 83109 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | |||| ||||| |||| || || || ||||||||||| || Sbjct 82651 CCTCCTCTTAAACGGAGAACCAAATGCAACGTGGATTCTTTTTGGATGTTATAGTCCGAA 82592 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || || || || |||||||| |||| || || ||||| | ||| Sbjct 82591 AGAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGA 82532 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||| | ||| |||| |||| || | | |||||||| | ||| || Sbjct 82531 ATAC-CTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATTGTGTCGCTAGGCTCAAC 82473 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| || || |||||||| ||||| Sbjct 82472 TTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTGACGAAAATTTGCAT 82425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || ||||| |||| |||| || || ||||||||||| || || || Sbjct 84247 CCACCACGAAGTCGTAAAACCAAGTGCAATGTAGATTCTTTCTGAATGTTGTAATCAGAA 84188 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | |||||||||||||| || || || || || || | ||| Sbjct 84187 AGAGTTCGACCATCTTCCAATTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGAGGA 84128 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| || | ||| | | |||||| || | ||| || Sbjct 84127 ATTCCTTCCTTGT-CTTGAATTTTAGCCTTGACGTTTTCGATAGTGTCACTAGGCTCGAC 84069 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || || | || || |||||||| ||||| Sbjct 84068 TTCGAGAGTGATGGTTTTGCCAGTTAAGGTTTTGACGAAAATTTGCAT 84021 >seq20950 Length=58994 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | || | ||| || || ||| |||||||| || || ||| Sbjct 36965 CCACCGCGTAGACGAAGTACTAAATGTAGGGTAGACTCTTTCTGAATATTGTAATCGCTC 36906 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || ||||| || || ||||| |||| || || || || | ||| Sbjct 36905 AAAGTTCGGCCGTCTTCCAGCTGTTTTCCAGCGAAGATCAATCGTTGCTGATCAGGAGGA 36846 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||||| ||| |||| |||| |||| | | || ||| || ||| || Sbjct 36845 ATGCCTTCTTTGTCC-TGAATTTTGGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 36787 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || |||||||| || | || || || || |||||||| || Sbjct 36786 TTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAGATCTGCATTTT 36736 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | || | ||| || || || |||||||| ||||| ||| Sbjct 37193 CCACCGCGTAGACGAAGTACTAAATGAAGAGTAGATTCTTTCTGAATATTATAATCGCTC 37134 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | || || |||||||| || | || || ||||| | || Sbjct 37133 AAAGTTCGGCCGTCTTCTAATTGTTTTCCGGCGAAAATTAATCGTTGCTGGTCAGGTGGG 37074 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| |||| |||| ||| | | ||||||| | ||| || Sbjct 37073 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTCACGTTCTCGATAGTGTCGGATGGCTCTAC 37015 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| |||| ||| ||||| ||||| ||||| Sbjct 37014 TTCCAAAGTAATAGTTTTACCAGTCAACGTTTTTACAAAAATTTGCAT 36967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462114900327600