Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq7 93.3 5e-14 >seq1 Length=28534321 Score = 143 bits (158), Expect = 3e-29 Identities = 161/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 24170 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 24229 |||||| |||||| ||||| | ||| ||||| || || |||||||| | |||||| || Sbjct 10911187 AATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTCAACCAAAAGAT 10911246 Query 24230 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||||| ||||||||||| || |||||||| || || ||||| || | | | || Sbjct 10911247 GGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCGACGACACGCTC 10911306 Query 24290 TCCATAACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 24346 || |||| || | |||| ||||| | |||||||| ||||||||||| || Sbjct 10911307 AGCAAAACCAGCATTTTCATTAGCAATCCATGCTAACGCCCAATCTGCCTTCTTTTTCAC 10911366 Query 24347 ACAAGGCATTGTCTCTATAGCATTAAAGAGATAGT 24381 ||| ||||||||||| || || || || ||| ||| Sbjct 10911367 ACACGGCATTGTCTCAATGGCGTTGAAAAGAAAGT 10911401 Score = 116 bits (128), Expect = 4e-21 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24418 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 24477 ||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||| | Sbjct 10911513 AAAGA--ATACATTTCCGAATGAACATTTTCCATTGCTATTTGAAACCCGTAAAAACAAC 10911570 Query 24478 TAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 24537 ||| || || | ||| ||||| | | ||| |||||| | |||||| ||||| |||| Sbjct 10911571 GAGCTTCCGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGATTTTCGTTCACAATTC 10911630 Query 24538 CGTCACTGGCTGCAAAAAACGCCAATACATG 24568 ||||| ||||| ||||| || | |||||| Sbjct 10911631 CGTCAGATGCTGCGAAAAATGCTAGTACATG 10911661 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | ||| |||||||| ||||||||||||| || ||||||||||||||||| || Sbjct 10911815 TTGGACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTTTTTATACATCCTC 10911874 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729 || | |||||||||||||||||||| || ||||| | ||||||||| Sbjct 10911875 CACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATTTT 10911923 >seq7 Length=7050299 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 |||| || ||||||||||||||||| | | |||||||| || || || | ||| | Sbjct 4909227 CTACCTGGAATTCTCCAGACAATACGCGTCTCGTGTAAATGTTTGAAGTGTAAGCTTCAA 4909286 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || ||||| || |||||||| |||||||| || || || ||||| ||||||| | || Sbjct 4909287 TGGATTCATTGTTGCCCAAAATCTGAGCAGTAGAAGCGGTGGGCATGGGTGCCAAAAGTA 4909346 Query 53268 AACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325 | ||||| || || ||| | || || || || |||| || |||||| ||| | Sbjct 4909347 GAGAATTTCGGAGTCC--ATGCTGTGCAATCTTTTCCTTTAAAGCAGCCCAATCCCATAA 4909404 Query 53326 ATCCGACGG 53334 ||| | ||| Sbjct 4909405 ATCGGTCGG 4909413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 201/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 || || | ||| |||||||| | || || || || || | ||| || | ||||| Sbjct 4909842 TCAGGTACAGGGTAATAATTTAGCTCGATGATCTTGTTCAAGTTCTTGGTCAAAACTTTA 4909901 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATC---TATTACAAACATGTTCAAT 53704 | || ||| || || ||||||||| | ||| | | ||||||||||| | Sbjct 4909902 GTGATATACTTGAGCTTTTCAAAATCAAAAGTTTTATCCGGTTTGACAAACATGTTGACG 4909961 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| || ||| || || || || | ||||| || | | ||||| || || ||| Sbjct 4909962 GCAATTGAGCCCAAGTTGCAGACAGCAATCTCATCAGGAGAAGAATATTCTACAATTTCA 4910021 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| ||||| || || || ||||| || |||| || || || |||| || Sbjct 4910022 GTGCACAGATTGGAGCATTTAATAGTTCCCAAGTTTTTCTGGTTGGATTTGATGTTGCAA 4910081 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||| || || ||| | || || || |||||||| || || || | ||| || | | Sbjct 4910082 GCATCCTTGTACAGCATGTAGGGAGTTCCGGTTTCAATTTGTGACTCGACAATGGCATAC 4910141 Query 53885 CA 53886 || Sbjct 4910142 CA 4910143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720397713760