Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 seq1 104 2e-17 seq2 86.0 6e-12 >seq9 Length=5511598 Score = 118 bits (130), Expect = 1e-21 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| ||||||||||| |||||||| | || ||||| | Sbjct 2315935 AAGATGCAAATCTTCGTGAAAACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 2315876 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | |||||| |||||| | ||||| || || |||||| | || Sbjct 2315875 AGTGACACGATCGAGAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGAT 2315816 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || || || ||||| || || | | | || | | ||| || Sbjct 2315815 CAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACGTTGAGCGATTAT 2315756 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT--GAGGGGCGGCG 40918 |||||||| || ||| |||| || ||||| || | ||| | |||||| |||| Sbjct 2315755 AACATCCAAAAAGAGTCCACCCTTCATCTCGTCCTCCGCCTCAGAGGGGGGGCG 2315702 >seq1 Length=28534321 Score = 104 bits (114), Expect = 2e-17 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 || || || || |||||||| || ||||| || || ||||| |||||| | || || Sbjct 10911661 CATGTACTAGCATTTTTCGCAGCATCTGACGGAATTGTGAACGAAAATCTGTTAGAACGG 10911602 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || |||| ||||||||| | || || || || || ||||| ||||| || || || Sbjct 10911601 TTTAGCA-AGGAAGTGCAGGTGACGGAAGCTCGTTGTTTTTACGGGTTTCAAATAGCAAT 10911543 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||| || || || |||||||||||||| || |||||||| ||| Sbjct 10911542 GGAAAATGTTCATTCGGAAATGTATTCTTTACTTATCGACACTTAC 10911497 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || |||||||| ||||||||||| |||| || || || || Sbjct 18434194 ATGCAGATCTTCGTAAAGACACTCACGGGGAAAACCATCACGCTCGAGGTTGAGCCCTCC 18434253 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||||| ||||| ||||| ||||| | |||||| Sbjct 18434254 GACACTATCGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAG 18434313 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || ||| | || | || || ||||| || || Sbjct 18434314 CAGCGATTAATTTTTGCTGGAAAACAACTTGA 18434345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| |||||||| || ||||| || | || || || || || Sbjct 18435124 ATGCAGATCTTCGTAAAAACACTCACGGGGAAGACCATTACGCTTGAGGTTGAGCCCTCC 18435183 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| |||||| | ||||| ||||| |||||| | |||||| Sbjct 18435184 GACACAATCGAAAATGTCAAGGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 18435243 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 || ||||| || | || || || || || || Sbjct 18435244 CAGCGACTGATTTTTGCTGGAAAGCAACTCGA 18435275 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || |||||||| ||||| |||||||| || ||| ||||||| || |||||| | ||| Sbjct 10911393 TTCAACGCCATTGAGACAATGCCGTGTGTGAAAAAGAAGGCAGATTGGGCGTTAGCATGG 10911334 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || || | | || | || | ||||| | || || || || || ||||| || Sbjct 10911333 ATTGCTAATGAAAATGCTGGTTTTGCTGAGCGTGTCGTCGCATTTGCAGCTGTCGAAGGA 10911274 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 | || ||||| || ||| || |||| |||||| | || || || || || ||||| Sbjct 10911273 ATATTTTTTTCTGGATCTTTTGCGTCCATCTTTTGGTTGAAAAAGCGAGGACTGATGCCG 10911214 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTC 117156 || | || |||||||||||| | || || Sbjct 10911213 GGATTAACGTTCAGCAACGAGTTAATTTC 10911185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || |||||||| |||| || || | || Sbjct 18434506 ATGCAGATCTTCGTCAAGACACTCACGGGGAAGACCATCACGCTCGAGGTTGAGCCTTCC 18434565 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||| | ||||| ||||| ||||| | |||||| Sbjct 18434566 GACACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAGGGGATCCCACCAGACCAG 18434625 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 ||||| || || | || || ||||| || || Sbjct 18434626 CAACGGCTGATTTTTGCAGGAAAACAACTCGA 18434657 >seq2 Length=19542282 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| || || || || | Sbjct 11828066 ATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACCCAAGAAGTGGAGCCCTCT 11828125 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| |||||| | ||| ||||| |||||| | |||||| Sbjct 11828126 GACACCATCGAGAATGTCAAGGCAAAAATCCAACACAGGGAGGGAATCCCCCCAGACCAG 11828185 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || | || || || ||||| || || | ||| || | | ||| |||||| Sbjct 11828186 CAGATGCTTATATTTGCCGGTAAGCAGCTCGAGGATGGGCGAACGTTAACCGAATACAAC 11828245 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| | |||| | || || |||| || |||| Sbjct 11828246 ATCCAAAGGGAGTCAACCCTCAATCTCGTCCTGCG 11828280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218156681120