Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7 100 3e-16 seq9 96.9 4e-15 seq5 95.1 1e-14 seq1 84.2 3e-11 >seq7 Length=7050299 Score = 100 bits (110), Expect = 3e-16 Identities = 83/102 (81%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 60042 AAATTAACGTTTATGAAAAATTTT------CTCCTCGGCAGGGAATCGAACCCTGGTCTC 60095 ||||| | ||||| ||||| ||| |||| || | ||||||||||||| |||||| Sbjct 2415727 AAATTTAAATTTATCAAAAAATTTGAGCGTCTCCCCGACGGGGAATCGAACCCCGGTCTC 2415668 Query 60096 CCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||| ||||| |||||||||||| |||||| Sbjct 2415667 CCGCGTGACAGGCGGGGATACTTACCACTATACTATCGAGGA 2415626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 60057 AAAAATTT-----TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 4218259 AAAAATTTGAGCGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 4218318 Query 60112 CATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 4218319 GATACTTACCACTATACTATCGAGGA 4218344 >seq9 Length=5511598 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || || ||||| || |||| | | || || |||||||| || || || Sbjct 2315741 CTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAA 2315800 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||| || | || | | ||||||||| ||||||| |||| | Sbjct 2315801 GATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 2315860 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || | || || || | |||||||| |||||||| || || || || Sbjct 2315861 CTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTTTTCAC 2315920 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||||||||| || || Sbjct 2315921 GAAGATTTGCATCTTCAC 2315938 >seq5 Length=10821126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3962043 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3961984 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3961983 TACTATCGAGGA 3961972 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3962690 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3962749 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3962750 TACTATCGAGGA 3962761 >seq1 Length=28534321 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || || || || ||||| || || | |||||||||||| | || | | |||||||||| Sbjct 18434345 TCAAGTTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 18434286 Query 43092 ATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 ||| |||| | |||| | | | |||||| | || || |||| ||||||||| Sbjct 18434285 -TGAATTTTAGCCTTGACATTTTCGATAGTGTCGGAGGGCTCAACCTCGAGCGTGATGGT 18434227 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || |||||||| ||||| ||||| Sbjct 18434226 TTTCCCCGTGAGTGTCTTTACGAAGATCTGCAT 18434194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816442069360