Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq7 123 2e-23 seq9 105 6e-18 >seq1 Length=28534321 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| | || ||| || || | || |||||||| ||||| || || ||||| ||| Sbjct 10911679 GAGAGAGAATTCATTTCTCATGTACTAGCATTTTTCGCAGCATCTGACGGAATTGTGAAC 10911620 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || ||| || | ||| | ||| | |||||||| |||||||| || | || |||||| Sbjct 10911619 GAAAATCTGTTAGAACGGTTTAGCAAGGAAGTGCAGGTGACGGAAGCTCGTTGTTTTTAC 10911560 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || |||||| | || || ||||| || ||||| ||||||||||| |||| ||||| || Sbjct 10911559 GGGTTTCAAATAGCAATGGAAAATGTTCATTCGGAAATGTATTCTTTACTTATCGACACT 10911500 Query 57849 TACGTGAAGGA 57859 ||| | ||||| Sbjct 10911499 TACATCAAGGA 10911489 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 57508 ATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAG 57567 |||| ||||| ||| ||| ||||| | | |||||||||||||| ||| |||||| | Sbjct 10911941 ATGAGCCACTGCTGCGAGAAAATCCAAGACGTTTTGTCATGTTTCCAATTCAATATCATG 10911882 Query 57568 ACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACC 57627 | | |||| ||||| |||||||||||||| || |||||||| | ||||||||||| Sbjct 10911881 ATTTGTGGAGGATGTATAAAAAGGCAGAAGCTTCATTTTGGACAGCAGAAGAAGTAGATT 10911822 Query 57628 TGTCTAAGG 57636 |||| |||| Sbjct 10911821 TGTCCAAGG 10911813 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || || ||||| ||||| |||| ||||| || ||| Sbjct 18434194 ATGCAGATCTTCGTAAAGACACTCACGGGGAAAACCATCACGCTCGAGGTTGAGCCCTCC 18434253 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | ||| ||||||||| || | || || |||||| Sbjct 18434254 GACACTATCGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAG 18434313 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| |||| || ||||| ||||| Sbjct 18434314 CAGCGATTAATTTTTGCTGGAAAACA 18434339 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| ||||||||| |||| || || || ||||| |||| ||||| || || Sbjct 18435745 CATGCAGATTTTTGTAAAGACTTTGACGGGGAAGACCATCACGCTCGAAGTTGAGCCTTC 18435804 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| || ||| ||||||||| || | || || ||||| Sbjct 18435805 TGACACGATTGAAAATGTCAAGGCGAAAATCCAGGACAAGGAGGGGATTCCACCAGACCA 18435864 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACA 31338 |||||| || || || ||||| ||||| Sbjct 18435865 GCAGCGACTGATTTTTGCTGGGAAACA 18435891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||| || || || |||||||| ||||| ||||| || |||||| | || |||||| Sbjct 10911296 TCGCATTTGCAGCTGTCGAAGGAATATTTTTTTCTGGATCTTTTGCGTCCATCTTTTGGT 10911237 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 |||| || || || |||||||| || | ||||| ||||||||||| || || || || | Sbjct 10911236 TGAAAAAGCGAGGACTGATGCCGGGATTAACGTTCAGCAACGAGTTAATTTCTCGTGATG 10911177 Query 58099 A 58099 | Sbjct 10911176 A 10911176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || || || || ||||| |||| ||||| || || Sbjct 18433882 ATGCAGATCTTCGTAAAGACACTCACGGGAAAGACCATCACGCTCGAAGTTGAGCCTTCT 18433941 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||||||||| || | || || |||||| Sbjct 18433942 GACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGGATTCCACCAGACCAG 18434001 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| |||| || ||||| ||||| Sbjct 18434002 CAGCGATTAATTTTTGCTGGAAAACA 18434027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || || || || || ||| |||| || || || || Sbjct 18435434 ATGCAAATCTTCGTAAAGACACTCACGGGTAAGACTATTACCCTCGAAGTCGAGCCCTCT 18435493 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | ||| ||||||||| || | || || |||||| Sbjct 18435494 GATACAATCGAAAACGTCAAGGCCAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAG 18435553 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| || || || ||||| || || Sbjct 18435554 CAGCGACTGATTTTTGCTGGAAAGCA 18435579 >seq7 Length=7050299 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || || || || ||||| ||||| | ||||||||| || ||| | | ||| | Sbjct 4909229 ACCTGGAATTCTCCAGACAATACGCGTCTCGTGTAAATGTTTGAAGTGTAAGCTTCAATG 4909288 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 ||||||||||| |||| |||||||| || |||||||| ||||| || ||||| ||||| Sbjct 4909289 GATTCATTGTTGCCCAAAATCTGAGCAGTAGAAGCGGTGGGCATGGGTGCCAAAAGTAGA 4909348 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAA--TTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 || |||| | || |||| || || |||| || | |||| | ||| ||||| | || Sbjct 4909349 GAATTTCGGAGTCCATGCTGTGCAATCTTTTCCTTTAAAGCA--GCCCAATCCCATAAAT 4909406 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 ||| ||| |||||| ||||||| || || ||||| Sbjct 4909407 CGGTCGGAGTCACA---CCCCACATGTCATACTGCAA 4909440 Score = 102 bits (112), Expect = 7e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| |||||||||| || ||| | | ||||| || || | ||| || || | Sbjct 4909947 ACAAACATGTTGACGGCAATTGAGCCCAAGTTGCAGACAGCAATCTCATCAGGAGAAGAA 4910006 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 || ||||||||||| || || |||||| || || || || ||||| || |||||||| Sbjct 4910007 TATTCTACAATTTCAGTGCACAGATTGGAGCATTTAATAGTTCCCAAGTTTTTCTGGTTG 4910066 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 ||| ||||| | ||||||||| |||||||| || || || || || | || ||| Sbjct 4910067 GATTTGATGTTGCAAGCATCCTTGTACAGCATGTAGGGAGTTCCGGTTTCAATTTGTGAC 4910126 Query 23186 TCGA 23189 |||| Sbjct 4910127 TCGA 4910130 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| | |||||||| || || || ||||| | || ||||||| || || || || Sbjct 4910360 TTCAACCCTCCTCATAAAGAGGTCAGGAATCCACATTGCATAGAACAAATCACGAGCTCG 4910419 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 ||||| ||||| |||||||| || | ||||||||| || || | |||||||||||| Sbjct 4910420 ATTTTCCTCCTTGCCCGTGTTCTTCTTGAGATCCAAAAATTCGAAAATGTCCGCATGCCA 4910479 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 ||||| | ||||| || || || || || | || ||| Sbjct 4910480 AGGCTCCAAGTAAATTGCGAATGCACCAGGGCGCTGATT 4910518 >seq9 Length=5511598 Score = 105 bits (116), Expect = 6e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || || || ||||| || ||||| | || || || || Sbjct 2315935 AAGATGCAAATCTTCGTGAAAACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 2315876 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | ||| |||||||||||| | || || || Sbjct 2315875 AGTGACACGATCGAGAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGAT 2315816 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || || || ||| | || || | ||| ||||||||||| Sbjct 2315815 CAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACGTTGAGCGATTAT 2315756 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGGGGCGG 31419 ||||| |||||||| || || |||||||| || || | || |||||| || Sbjct 2315755 AACATCCAAAAAGAGTCCACCCTTCATCTCGTCCTCCGCCTCAGAGGGGGGG 2315704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765497323040