Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 125 9e-24 seq7 93.3 5e-14 >seq1 Length=28534321 Score = 125 bits (138), Expect = 9e-24 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 |||||| ||||| ||||| | ||| ||||| || || |||||||| | |||||| || Sbjct 10911187 AATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTCAACCAAAAGAT 10911246 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 ||| || || ||||| ||||| || |||||||| || || ||||| || | | | ||| Sbjct 10911247 GGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCGACGACACGCTC 10911306 Query 33737 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || |||| || | |||| ||||| | |||||||| ||||||||||| || Sbjct 10911307 AGCAAAACCAGCATTTTCATTAGCAATCCATGCTAACGCCCAATCTGCCTTCTTTTTCAC 10911366 Query 33794 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33828 ||| ||||| || || ||||| || || ||| ||| Sbjct 10911367 ACACGGCATTGTCTCAATGGCGTTGAAAAGAAAGT 10911401 Score = 118 bits (130), Expect = 1e-21 Identities = 127/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 33852 TAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAA 33909 ||||| ||||| | ||||| ||||||||||||||||| ||||| || || || |||| Sbjct 10911498 TAAGTGTCGATAAGTAAAGA--ATACATTTCCGAATGAACATTTTCCATTGCTATTTGAA 10911555 Query 33910 ATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAAT 33969 | ||||| ||||| | ||| || || | ||||||||| | | ||| |||||| | || Sbjct 10911556 ACCCGTAAAAACAACGAGCTTCCGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGAT 10911615 Query 33970 TTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 |||| ||||| ||||| ||| ||||| ||||| || | |||||| Sbjct 10911616 TTTCGTTCACAATTCCGTCAGATGCTGCGAAAAATGCTAGTACATG 10911661 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || || | ||| |||||||| ||||||||||||| || ||||||||||||||||| || Sbjct 10911815 TTGGACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTTTTTATACATCCTC 10911874 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || | ||||||||||| ||||| || || ||||| | |||||||| Sbjct 10911875 CACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATTT 10911922 >seq7 Length=7050299 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 |||| |||||||||||||||||||| | | |||||||| || || || | ||| | Sbjct 4909227 CTACCTGGAATTCTCCAGACAATACGCGTCTCGTGTAAATGTTTGAAGTGTAAGCTTCAA 4909286 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505 || ||||| || |||||||| |||||||| || || || ||||| ||||||| | || Sbjct 4909287 TGGATTCATTGTTGCCCAAAATCTGAGCAGTAGAAGCGGTGGGCATGGGTGCCAAAAGTA 4909346 Query 62506 AACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | ||||| || || ||| | || || || || |||| | |||||| ||| | Sbjct 4909347 GAGAATTTCGGAGTCC--ATGCTGTGCAATCTTTTCCTTTAAAGCAGCCCAATCCCATAA 4909404 Query 62564 ATCCGACGG 62572 ||| | ||| Sbjct 4909405 ATCGGTCGG 4909413 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 ||||||||||| | |||| || ||| || || || || | ||||| || | | | Sbjct 4909947 ACAAACATGTTGACGGCAATTGAGCCCAAGTTGCAGACAGCAATCTCATCAGGAGAAGAA 4910006 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || || |||||||| ||||| || || |||||||| || |||| || || Sbjct 4910007 TATTCTACAATTTCAGTGCACAGATTGGAGCATTTAATAGTTCCCAAGTTTTTCTGGTTG 4910066 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || |||| || |||||||| || || ||| | ||||| || |||||||| || || Sbjct 4910067 GATTTGATGTTGCAAGCATCCTTGTACAGCATGTAGGGAGTTCCGGTTTCAATTTGTGAC 4910126 Query 63108 TCTATAATCGCTTTCCA 63124 || | ||| || | ||| Sbjct 4910127 TCGACAATGGCATACCA 4910143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816324619360