Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq7 89.7 5e-13 >seq1 Length=28534321 Score = 116 bits (128), Expect = 3e-21 Identities = 142/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Plus Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || |||||||| ||||||| |||||| ||||| | |||||| || | ||||| || ||| Sbjct 10911203 AACGTTAATCCCGGCATCAGTCCTCGCTTTTTCAACCAAAAGATGGACGCAAAAGATCCA 10911262 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACC----TT 11796 ||||| |||||||| || |||||||||||||| || || | || || | ||| || Sbjct 10911263 GAAAAAAATATTCCTTCGACAGCTGCAAATGCGACGACACGCTCAGCA-AAACCAGCATT 10911321 Query 11797 GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTC 11856 | ||| |||||| | |||||||| || |||||||| || || |||||| || Sbjct 10911322 TTCATTAGCAATCCATGCTAACGCCCAATCTGCCTTCTTTTTCACACACGGCATTGTCTC 10911381 Query 11857 TATAGCGTTAAA 11868 || ||||| || Sbjct 10911382 AATGGCGTTGAA 10911393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | |||| ||||||||| ||||||| ||||||||| ||||||||||| Sbjct 10911498 TAAGTGTCGATAAGTAAAGAATACATTTCCGAATGAACATTTTCCATTGCTATTTGAAAC 10911557 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 || || ||||| || || || | ||| || ||| ||| | ||| | ||| Sbjct 10911558 CCGTAAAAACAACGAGCTTCCGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGATTT 10911617 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATG 12063 || || ||||| || ||| | ||| ||||||||||||| ||| Sbjct 10911618 TCGTTCACAATTCCGTCAGATGCTGCGAAAAATGCTAGTACATG 10911661 >seq7 Length=7050299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || |||||||| ||||| | ||| || || || || ||| || | ||||||| Sbjct 4909229 ACCTGGAATTCTCCAGACAATACGCGTCTCGTGTAAATGTTTGAAGTGTAAGCTTCAATG 4909288 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || ||||| || | || || |||| ||||| || || ||||| ||||| | || || Sbjct 4909289 GATTCATTGTTGCCCAAAATCTGAGCAGTAGAAGCGGTGGGCATGGGTGCCAAAAGTAGA 4909348 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTT-TTTAGTTCATTCCAATCCCATAAATC 37316 ||||| | |||||| | | | ||| || |||| || ||||||||||||||| Sbjct 4909349 GAATTTCGGAGTCCATGC-TGTGCAATCTTTTCCTTTAAAGCAGCCCAATCCCATAAATC 4909407 Query 37317 TGTTGGGTTCTTTAACCACATATCATATTGTAGAAT 37352 || || || |||||| ||||| || | ||| Sbjct 4909408 GGTCGGAGTCACACCCCACATGTCATACTGCAAAAT 4909443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523851237280