Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq7 104 2e-17 seq1 96.9 3e-15 >seq9 Length=5511598 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||||||||| |||||||||||||||| || ||| || |||||||| Sbjct 2315730 TGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCCTCGAGCTGC 2315789 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| || | |||||||| || || || ||||| ||||| ||||||| Sbjct 2315790 TTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTT 2315849 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | ||||| ||||||| || | |||||||| || Sbjct 2315850 GCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTG 2315909 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| |||||||| Sbjct 2315910 AGGGTTTTCACGAAGATTTGCAT 2315932 >seq7 Length=7050299 Score = 104 bits (114), Expect = 2e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 ||||||||||||| || |||||||||| || ||| | || || || | |||||| || Sbjct 4909954 TGTTGACGGCAATTGAGCCCAAGTTGCAGACAGCAATCTCATCAGGAGAAGAATATTCTA 4910013 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAA-TTACTTTGATTGCTTTTG 153743 | ||||| | |||| |||| |||||| || || | ||| || | || ||| |||| Sbjct 4910014 CAATTTCAGTGCACAGATTGGAGCATTTAAT-AGTTCCCAAGTTTTTCTGGTTGGATTTG 4910072 Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||| ||||| |||||||| |||||||| || || |||||||| Sbjct 4910073 ATGTTGCAAGCATCCTTGTACAGCATGTAGGGAGTTCCGGTTTC 4910116 >seq1 Length=28534321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 ||||| || || |||||| | ||||| || ||||| || || || || || || ||||| Sbjct 18435275 TCGAGTTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 18435216 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||||||| || | | ||| | |||||||| |||||| ||||||| || | ||| Sbjct 18435215 TGGATTTTTGCCTTGACATTTTCGATTGTGTCGGAGGGCTCAACCTCAAGCGTAATGGTC 18435156 Query 139733 TTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || || | ||||||||||| || |||||| Sbjct 18435155 TTCCCCGTGAGTGTTTTTACGAAGATCTGCATA 18435123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGA--CAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATG 52589 ||||||| |||| ||||| ||||||||| || |||| |||||||| || ||| Sbjct 10911392 TCAACGCCATTGAGACAATG--CCGTGTGTGAAAAAGAAGGCAGATTGGGCGTTAGCATG 10911335 Query 52590 GATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGG 52649 ||| | || || || || |||||| || ||| | ||||| ||||| || ||||| Sbjct 10911334 GATTGCTAATGAAAATGCTGGTTTTGCTGAGCGTGTCGTCGCATTTGCAGCTGTCGAAGG 10911275 Query 52650 TGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCC 52709 | |||||||| || ||||||| | || |||| | |||| || | ||||| Sbjct 10911274 AATATTTTTTTCTGGATCTTTTGCGTCCATCTTTTGGTTGAAAAAGCGAGGACTGATGCC 10911215 Query 52710 CGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAAT 52754 || | ||||| ||||||||||| || || || || |||| ||| Sbjct 10911214 GGGATTAACGTTCAGCAACGAGTTAATTTCTCGTGATGAAGTAAT 10911170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062995470400