Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 145 1e-29 seq7 96.9 5e-15 >seq1 Length=28534321 Score = 145 bits (160), Expect = 1e-29 Identities = 168/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| | | |||||| |||||| ||||| | ||| ||||| || || |||||||| Sbjct 10911176 TCATCACGAGAAATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTC 10911235 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 | |||||| || |||||||| ||||||||||| || |||||||| || || ||||| || Sbjct 10911236 AACCAAAAGATGGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCG 10911295 Query 42209 ATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTTTTGAGCCCAATCGGCC 42265 | | | ||| || |||| ||| | |||| ||||| | |||||||| ||| Sbjct 10911296 ACGACACGCTCAGCAAAACCAGCATTTTCATTAGCAATCCATGCTAACGCCCAATCTGCC 10911355 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 42311 |||||||| ||||| ||||| || || ||||| || || ||| ||| Sbjct 10911356 TTCTTTTTCACACACGGCATTGTCTCAATGGCGTTGAAAAGAAAGT 10911401 Score = 118 bits (130), Expect = 1e-21 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | ||||||||||||| | ||||||||||| |||||||||||||||||||| || Sbjct 10911815 TTGGACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTTTTTATACATCCTC 10911874 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 || | |||||||||||||||||| || || ||||| | |||||||| Sbjct 10911875 CACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATTT 10911922 Score = 109 bits (120), Expect = 7e-19 Identities = 125/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 42335 TATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAA 42392 || || ||||| | ||||| ||||||||| ||||||| ||||| || || || |||| Sbjct 10911498 TAAGTGTCGATAAGTAAAGA--ATACATTTCCGAATGAACATTTTCCATTGCTATTTGAA 10911555 Query 42393 ATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAAT 42452 | ||||| ||||| | || || || ||||| ||||| | | ||| ||||| | || Sbjct 10911556 ACCCGTAAAAACAACGAGCTTCCGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGAT 10911615 Query 42453 TTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 42498 |||||||||| ||||||||| ||||| ||||| || | |||||| Sbjct 10911616 TTTCGTTCACAATTCCGTCAGATGCTGCGAAAAATGCTAGTACATG 10911661 >seq7 Length=7050299 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 71141 CTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCA 71200 |||| || ||||||||||||||||| | | |||||||| || || || | ||| | Sbjct 4909227 CTACCTGGAATTCTCCAGACAATACGCGTCTCGTGTAAATGTTTGAAGTGTAAGCTTCAA 4909286 Query 71201 CTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 71260 || ||||| || |||||||| |||||||| || || || ||||| ||||||| | || Sbjct 4909287 TGGATTCATTGTTGCCCAAAATCTGAGCAGTAGAAGCGGTGGGCATGGGTGCCAAAAGTA 4909346 Query 71261 GACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGAT 71320 || ||||| || ||||| | || || || |||| || |||||| ||| | || Sbjct 4909347 GAGAATTTCGGAGTCCATGCTGTGCAATCTTTTCCTTTAAAGCAGCCCAATCCCATAAAT 4909406 Query 71321 C 71321 | Sbjct 4909407 C 4909407 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71683 ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA 71742 ||||||| ||| | ||||| || ||| || || || || | ||||| || | | | Sbjct 4909947 ACAAACATGTTGACGGCAATTGAGCCCAAGTTGCAGACAGCAATCTCATCAGGAGAAGAA 4910006 Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| || |||||||||||| ||||| || || || ||||| || |||| || || Sbjct 4910007 TATTCTACAATTTCAGTGCACAGATTGGAGCATTTAATAGTTCCCAAGTTTTTCTGGTTG 4910066 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 || |||| || |||||||| || || || | ||||| || |||||||| || || Sbjct 4910067 GATTTGATGTTGCAAGCATCCTTGTACAGCATGTAGGGAGTTCCGGTTTCAATTTGTGAC 4910126 Query 71863 TCTATAATCGCTTTCCA 71879 || | ||| || | ||| Sbjct 4910127 TCGACAATGGCATACCA 4910143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137840943120