Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7 114 3e-20 seq1 89.7 1e-12 >seq7 Length=7050299 Score = 114 bits (126), Expect = 3e-20 Identities = 321/482 (67%), Gaps = 27/482 (6%) Strand=Plus/Plus Query 111316 TTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGT 111375 ||||||| || || || ||||| | |||| || | || ||||| || || |||| Sbjct 2087120 TTCCACTACTGACCACGAAGCGTGTCTTTTGGCGAGGTGTGGTGGAAGAGCTGCTCTGGT 2087179 Query 111376 TTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATG 111435 | ||| |||||||| || || ||||| || | ||| ||||| | || ||||||| Sbjct 2087180 TCATTAAAGGAAGTACCAACGCTAATGAGCTAAATGAAAAGAATGTCCACATCTGGGATG 2087239 Query 111436 GAAATGGATCACGTGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGA 111493 | ||| || | || ||| |||| ||| || | || | || |||||||| Sbjct 2087240 GGAATTCGTCCAGAGAATTTTTAGACAATCAA--GGATTCACAGATAGAGAGGAAGGTGA 2087297 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 || || ||||||||||| | ||||||||| || ||||| || || |||||||| ||||| Sbjct 2087298 CCTTGGCCCAGTTTACGGGTATCAATGGCGTCATTTTGGGGCTGAATACAAAACAATGCA 2087357 Query 111554 CGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCAT-----TGATCAAATT 111608 ||| || | || || ||| ||||| || | || || |||||| Sbjct 2087358 CGATGACTACTCTGGGCAAGGTGTTGACCAATTGAAGGAGGTGATTCGGATGATCA---- 2087413 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 ||||| ||||| || | | ||||| ||| || |||||||| | || | | Sbjct 2087414 AAGAA-GACCCATACTCGAGGAGAATTATCATGTCAGCTTGGAACCCTAGTGATCTTCCA 2087472 Query 111669 AAAATGGCACTTCCACCATGTCAT--CTTATGTGCCAGTTTTATGTACA-----CGACG- 111720 ||||||||||| ||||| ||| ||| ||| |||||||||||| | | | | Sbjct 2087473 CTCATGGCACTTCCTCCATGCCATTGCTT-TGT-TCAGTTTTATGTAAATCCTGCAAAGA 2087530 Query 111721 -GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGT-TCCGTT 111778 ||| || || ||||||||||| || || || ||| |||| |||||| | || ||| Sbjct 2087531 AGGA-ACTGAGCTGTCAAATGTATCAACGGTCGGCAGATGTTGGGCTTGGTATGTCAGTT 2087589 Query 111779 TA 111780 || Sbjct 2087590 TA 2087591 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 364914 CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGA 364973 ||||||||| | |||| || || || || || ||| | | || ||| | | || || Sbjct 4908943 CATGAAGAATCAACTCATTGCTGCGAACGGATCGGTGAAAGATATCGCAGAAATCCCGGA 4908884 Query 364974 AGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATAT 365033 || || ||| || | || |||||||| ||||||||||| ||| ||||||| || Sbjct 4908883 TGACCTTAAGGCTTTGTATAAAACCGTTTGGGAAATTTCTCAACGAGACGTCATTGACAT 4908824 Query 365034 GGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCA 365093 ||| |||||||| || ||||| || |||| || ||| | || | |||| || Sbjct 4908823 GGCAGCCGATCGTGGAGCTTTCATTGATCAGTCACAATCGCTGAA--TCTTCACATTGCA 4908766 Query 365094 G--CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | || | | ||||||| | ||||| ||||||||||||| |||||| Sbjct 4908765 GCACCCAGTTTCGCCAAGTTGACATCAATGCATTTCTACGCATGGAAA 4908718 Score = 93.3 bits (102), Expect = 1e-13 Identities = 121/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| || || || || || || | |||||| ||||| || ||||| || ||| Sbjct 4910514 AGCGCCCTGGTGCATTCGCAATTTACTTGGAGCCTTGGCATGCGGACATTTTCGAATTTT 4910455 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | || ||| ||| |||||||| || |||||| || || |||||| ||||||||||| Sbjct 4910454 TGGATCTCAAGAAGAACACGGGCAAGGAGGAAAATCGAGCTCGTGATTTGTTCTATGCAA 4910395 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT-AAGA 363994 | ||| || |||||| ||||||| | | || || || ||| |||| Sbjct 4910394 TGTGGATTCCTGACCTCTTTATGAGGAGGGTTGAAGCCGGTGAAGA 4910349 >seq1 Length=28534321 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTC---ATTCGCGGAA 22491 || || ||||||||||||||| | |||||| |||||| | | || || || Sbjct 10911363 AAAAAGAAGGCAGATTGGGCGTTAGCATGGATTGCTAATGAAAATGCTGGTTTTGCTGAG 10911304 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| | | |||||||| | || ||||| || || ||||||||| | ||||| | | || Sbjct 10911303 CGTGTCGTCGCATTTGCAGCTGTCGAAGGAATATTTTTTTCTGGATC-TTTTGCGTCCAT 10911245 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 ||||||| | ||||| || | | | |||||||| ||||||| || ||||||||| Sbjct 10911244 CTTTTGGTTGAAAAAGCGAGGACTGATGCCGGGATTAACGTTCAGCAACGAGTTAATTTC 10911185 Query 22611 CCGAGATGA 22619 || ||||| Sbjct 10911184 TCGTGATGA 10911176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350894726684