Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 140 2e-28 seq9 91.5 1e-13 >seq2 Length=19542282 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8182561 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8182620 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8182621 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8182655 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8184929 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 8184988 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 8184989 GGTCATATTTAGCCTTA 8185005 Score = 96.9 bits (106), Expect = 2e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 6171 CTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC 6230 || ||||| ||||| | | || |||| ||||| || ||||||||||| || Sbjct 8460739 CTCAACGTGAATCGCACCATTGCCGACGTCTTCTATCGGTACAAAATGCCCAAACTCCAA 8460680 Query 6231 GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTC 6290 |||||||| ||||| || ||||| || |||||||||||||||||||| ||| || || Sbjct 8460679 GCCAAGGTTGAGGGGAAAGGAAATGGAATTAAAACCGTCATTGTCAATATGGTGGATGTG 8460620 Query 6291 GCTAAGGCGCTCGGACGCCCT 6311 || || ||||| ||||| ||| Sbjct 8460619 GCCAAAGCGCTTGGACGTCCT 8460599 >seq9 Length=5511598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | || | || | |||||| ||| ||| ||||| || || ||||| | Sbjct 2315706 CCCCCTCTGAGGCGGAGGACGAGATGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTC 2315765 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | || || | || ||||||||||| || || | || ||||| | |||| Sbjct 2315766 AACGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGG 2315825 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| |||||| ||| ||||||| || || || | | || || Sbjct 2315826 ATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATTCTCGATCGTGTCACTAGGCTCGACC 2315885 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | |||||||||||| || ||||| || Sbjct 2315886 TCAAGAGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAGATTTGCATCTT 2315935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946538688622