Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 159 6e-34 seq2 136 7e-27 seq1 105 1e-17 seq5 86.0 1e-11 seq3 84.2 4e-11 >seq9 Length=5511598 Score = 159 bits (176), Expect = 6e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||||||||||||||||||||||||| | ||||||||||| || | |||| Sbjct 2315730 TGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCCTCGAGCTGC 2315789 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || || || || || || || || || || ||||||||||| || || ||| Sbjct 2315790 TTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTT 2315849 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||||||| |||||| ||||| | || || || | |||||||| || |||||| Sbjct 2315850 GCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTG 2315909 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || ||||| Sbjct 2315910 AGGGTTTTCACGAAGATTTGCAT 2315932 >seq2 Length=19542282 Score = 136 bits (150), Expect = 7e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || || ||||| |||||||||| || |||| | || | |||||| || | |||||| Sbjct 11828265 AGGGTTGACTCCCTTTGGATGTTGTATTCGGTTAACGTTCGCCCATCCTCGAGCTGCTTA 11828206 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| ||||| || | || ||||| || || || || ||| ||| ||| || |||||| Sbjct 11828205 CCGGCAAATATAAGCATCTGCTGGTCTGGGGGGATTCCCTCCCTGTGTTGGATTTTTGCC 11828146 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||||||| | | || ||||| ||||||||| || || || | Sbjct 11828145 TTGACATTCTCGATGGTGTCAGAGGGCTCCACTTCTTGGGTGATGGTCTTGCCAGTCAAT 11828086 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||||||||| |||||||| Sbjct 11828085 GTCTTGACGAAGATCTGCAT 11828066 >seq1 Length=28534321 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || || || || | || || ||||| |||||||| || |||||||| || || Sbjct 18434027 TGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGATT 18433968 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || ||||||||| || || ||||| | | || ||||| | |||||||| |||||| Sbjct 18433967 TTGGCCTTGACGTTTTCAATTGTGTCAGAAGGCTCAACTTCGAGCGTGATGGTCTTTCCC 18433908 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| |||||||| Sbjct 18433907 GTGAGTGTCTTTACGAAGATCTGCAT 18433882 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || || || || | || || ||||| ||||| || || |||||||| ||||| Sbjct 18434339 TGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATT 18434280 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || |||||||| ||||| ||||| | | || || || | ||||||||||| ||| Sbjct 18434279 TTAGCCTTGACATTTTCGATAGTGTCGGAGGGCTCAACCTCGAGCGTGATGGTTTTCCCC 18434220 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| |||||||| Sbjct 18434219 GTGAGTGTCTTTACGAAGATCTGCAT 18434194 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || || || || || | ||| ||||| ||||| || || |||||||| || || Sbjct 18434651 TGTTTTCCTGCAAAAATCAGCCGTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATT 18434592 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || |||||||| ||||| ||||| | | || || || | |||||||| || ||| Sbjct 18434591 TTCGCCTTGACATTTTCGATTGTGTCGGAAGGCTCAACCTCGAGCGTGATGGTCTTCCCC 18434532 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| |||||||| Sbjct 18434531 GTGAGTGTCTTGACGAAGATCTGCAT 18434506 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| || || || || |||| || ||||| || || || || |||||||| || || Sbjct 18435269 TGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGGATT 18435210 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 ||||||||||| ||||| ||||| | | || || || | || ||||| || ||| Sbjct 18435209 TTTGCCTTGACATTTTCGATTGTGTCGGAGGGCTCAACCTCAAGCGTAATGGTCTTCCCC 18435150 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||| |||||||| Sbjct 18435149 GTGAGTGTTTTTACGAAGATCTGCAT 18435124 >seq5 Length=10821126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 3952358 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3952417 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 3952418 CCCACGTTGGGC 3952429 >seq3 Length=15527869 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||| || || ||||||||||| || || || || | ||| || || Sbjct 13620693 CCTTCTTTGTCCTGGATTTTTGCCTTGACATTTTCAATTGTATCACTGGGTTCGACCTCA 13620634 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 13620633 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 13620590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620533714640