Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-19 seq9 109 1e-18 seq3 93.3 1e-13 >seq1 Length=28534321 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 |||||||||||| || ||||| || || || |||||| || || || |||||||| Sbjct 18434652 TTGTTTTCCTGCAAAAATCAGCCGTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGAT 18434593 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || || ||||| || | ||| | || || ||||||||||| |||||||| Sbjct 18434592 TTTCGCCTTGACATTTTCGATTGTGTCGGAAGGCTCAACCTCGAGCGTGATGGTCTTCCC 18434533 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||| Sbjct 18434532 CGTGAGTGTCTTGACGAAGATCTGCAT 18434506 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 |||||| || || || ||||| ||||| || ||| || || || || |||||||| Sbjct 18435892 TTGTTTCCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGAT 18435833 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || || ||||| || | || | || |||||||||||||| |||||||| Sbjct 18435832 TTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCAACTTCGAGCGTGATGGTCTTCCC 18435773 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||| || || |||||||| Sbjct 18435772 CGTCAAAGTCTTTACAAAAATCTGCAT 18435746 Score = 96.9 bits (106), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| || || ||||| ||||| || |||||| || || || |||||||| Sbjct 18434965 TTGTTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGAT 18434906 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || || ||||| || | || | || |||||||| || || |||||||| Sbjct 18434905 TTTCGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACTTCGAGAGTAATGGTCTTCCC 18434846 Query 288447 GGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || ||||||||| Sbjct 18434845 CGTGAGTGTCTTAACAAAAATCTGCATT 18434818 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| || || || | ||||| || ||| || || || || |||||||| Sbjct 18434028 TTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGAT 18433969 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| || || |||||||| || | || | || |||||||||||||| ||||| || Sbjct 18433968 TTTGGCCTTGACGTTTTCAATTGTGTCAGAAGGCTCAACTTCGAGCGTGATGGTCTTTCC 18433909 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| Sbjct 18433908 CGTGAGTGTCTTTACGAAGATCTGCAT 18433882 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| || || || | ||||| || |||||| || || || ||||| || Sbjct 18434340 TTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAAT 18434281 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| || || || ||||| |||| ||| | || || ||||||||||| || ||||| Sbjct 18434280 TTTAGCCTTGACATTTTCGATAGTGTCGGAGGGCTCAACCTCGAGCGTGATGGTTTTCCC 18434221 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| Sbjct 18434220 CGTGAGTGTCTTTACGAAGATCTGCAT 18434194 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| || || ||||| | ||| || ||| || || || || |||||||| Sbjct 18433717 TTGTTTTCCAGCAAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGAT 18433658 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 |||||| || || ||||| || | || | || || ||||| || || |||||||| Sbjct 18433657 TTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCGACCTCGAGGGTAATGGTCTTCCC 18433598 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| |||||||| Sbjct 18433597 AGTGAGTGTCTTAACGAAAATCTGCAT 18433571 >seq9 Length=5511598 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| ||| ||||||||||| ||||| ||| | ||| | || || Sbjct 2315721 AGGACGAGATGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCC 2315780 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || | || ||||| || ||||| || | ||| || |||| ||||||||||| || Sbjct 2315781 TCGAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTG---ATCTGGGGGGATTCCTTCCTTG 2315837 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||||||||| || || || || || || | || || | || || || || ||||| Sbjct 2315838 TCCTGGATTTTTGCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATG 2315897 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| || ||||| Sbjct 2315898 GTCTTGCCCGTGAGGGTTTTCACGAAGATTTGCAT 2315932 >seq3 Length=15527869 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| ||||||||||| || || || ||||| || | ||| || | ||| || || Sbjct 13620693 CCTTCTTTGTCCTGGATTTTTGCCTTGACATTTTCAATTGTATCACTGGGTTCGACCTCA 13620634 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 13620633 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 13620590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651951479836