Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq7 91.5 2e-13 seq1 89.7 6e-13 seq5 86.0 7e-12 >seq9 Length=5511598 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || || ||||| || |||| | | || || |||||||| || || || Sbjct 2315741 CTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAA 2315800 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||| || | || | | ||||||||| ||||||| |||| | Sbjct 2315801 GATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 2315860 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || | || || || | |||||||| |||||||| || || || || Sbjct 2315861 CTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTTTTCAC 2315920 Query 42197 AAAGATTTGCATTTTCAC 42214 ||||||||||| ||||| Sbjct 2315921 GAAGATTTGCATCTTCAC 2315938 >seq7 Length=7050299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 81/102 (79%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 56983 AAATTAACGTTTATGAAAAATTTT------CTCCTCGGCAAGAAATCGAACCCTGGTCTC 57036 ||||| | ||||| ||||| ||| |||| || | | |||||||||| |||||| Sbjct 2415727 AAATTTAAATTTATCAAAAAATTTGAGCGTCTCCCCGACGGGGAATCGAACCCCGGTCTC 2415668 Query 57037 CCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||| ||||| |||||||||||| |||||| Sbjct 2415667 CCGCGTGACAGGCGGGGATACTTACCACTATACTATCGAGGA 2415626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 56998 AAAAATTT-----TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||||||| ||||| || | | |||||||||| ||||||||||||||||||||| Sbjct 4218259 AAAAATTTGAGCGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 4218318 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 4218319 GATACTTACCACTATACTATCGAGGA 4218344 >seq1 Length=28534321 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || || || || ||||| || || | |||||||||||| | ||| | | |||||||||| Sbjct 18434345 TCAAGTTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 18434286 Query 42117 ATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 ||| |||| | |||| | | | |||||| | || || |||| ||||||||| Sbjct 18434285 -TGAATTTTAGCCTTGACATTTTCGATAGTGTCGGAGGGCTCAACCTCGAGCGTGATGGT 18434227 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || |||||||| ||||| ||||| Sbjct 18434226 TTTCCCCGTGAGTGTCTTTACGAAGATCTGCAT 18434194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || || || || ||||| || || |||||||||||||| | ||| | | |||||||||| Sbjct 18435897 TCAAGTTGTTTCCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGAATCCCCTCCTTGTCC 18435838 Query 42117 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 |||||| |||| | | | |||||| | || || |||| ||||||||| Sbjct 18435837 TGGATTTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCAACTTCGAGCGTGATGGTC 18435778 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| | ||||||||||| || ||||| Sbjct 18435777 TTCCCCGTCAAAGTCTTTACAAAAATCTGCAT 18435746 >seq5 Length=10821126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3962043 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3961984 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3961983 TACTATCGAGGA 3961972 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3962690 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3962749 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3962750 TACTATCGAGGA 3962761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211699994080