Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 4e-15 seq2 84.2 2e-11 >seq9 Length=5511598 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| || || ||| | || | | | || ||||||||||| ||||| || Sbjct 2315741 CTCTTTTTGGATGTTATAATCGCTCAACGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAA 2315800 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | ||||||||| ||| || ||||| | Sbjct 2315801 GATAAGCCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATT 2315860 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || | || || || | |||||||| |||||||| || ||||| || Sbjct 2315861 CTCGATCGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTTTTCAC 2315920 Query 46582 AAAGATTTGCATTTTGCACA 46601 ||||||||||| || |||| Sbjct 2315921 GAAGATTTGCATCTT-CACA 2315939 >seq2 Length=19542282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||| ||||||| ||||| |||| || || ||| | || ||||||||||| ||||| || Sbjct 11828257 CTCCCTTTGGATGTTGTATTCGGTTAACGTTCGCCCATCCTCGAGCTGCTTACCGGCAAA 11828198 Query 46462 TATCAAGC-GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 ||| |||| ||||||||| | || | | |||| ||| ||| || ||||| Sbjct 11828197 TAT-AAGCATCTGCTGGTCTGGGGGGATTCCCTCCCTGTGTTGGATTTTTGCCTTGACAT 11828139 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||| | ||||| || |||||||| ||||| |||| || || | Sbjct 11828138 TCTCGATGGTGTCAGAGGGCTCCACTTCTTGGGTGATGGTCTTGCCAGTCAATGTCTTGA 11828079 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 11828078 CGAAGATCTGCAT 11828066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237255392240