Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq9 109 5e-19 seq2 91.5 1e-13 >seq1 Length=28534321 Score = 113 bits (124), Expect = 5e-20 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| || |||||||||||||| || || || ||||| || |||||||| Sbjct 10911497 GTAAGTGTCGATAAGTAAAGAATACATTTCCGAATGAACATTTTCCATTGCTATTTGAAA 10911556 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGAT 133285 |||||||| || || || || |||||||||||| | || ||| || || | ||||| Sbjct 10911557 CCCGTAAAAACAACGAGCTTCCGTCACCTGCACTTCCT-TGCTAAACCGTTCTAACAGAT 10911615 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 ||||||| || || ||||| || |||||||| || || || || Sbjct 10911616 TTTCGTTCACAATTCCGTCAGATGCTGCGAAAAATGCTAGTACATG 10911661 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 132928 GAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAAT 132987 ||||| | ||||||||||| || || || ||||| || || || ||||| | |||||| Sbjct 10911185 GAAATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTCAACCAAAAG 10911244 Query 132988 ATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGC 133047 |||| || ||| || ||||| || | || ||||| || || || || || | ||| Sbjct 10911245 ATGGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCGACGACACGC 10911304 Query 133048 TCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG 133107 || | || || | || | || ||||| | |||||| || ||||| | ||| Sbjct 10911305 TCAGCAAAACCAGCATTTTCATTAGCAATCCATGCTAACGCCCAATCTGCCTTCTTTTTC 10911364 Query 133108 ACGCACGGCATCGTTTCGATGGCGTTCAA 133136 || |||||||| || || |||||||| || Sbjct 10911365 ACACACGGCATTGTCTCAATGGCGTTGAA 10911393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGT---CGTCCTTGGCAAACATCACGCCAAATTTT 132606 ||||| || || | ||||| ||| | || | ||||||| ||||||| ||| ||| Sbjct 10910657 TAAAAATCAGCGTTCAAAGAAAATGCGTTTTCATCCTTGGTCGACATCACTCCAGCTTTC 10910716 Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 ||||| || || ||||||||||| || ||||||||||| || || | ||| ||| || | Sbjct 10910717 TGATACTCACCAACCTTTTTCTCGAAGAAATTAGTTTTGCCTTCGAGGGAGATGTGCTCC 10910776 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTA 132695 || ||||| || || || | | |||||| Sbjct 10910777 ATGAAATCGAATGGATTTTCAGAGTTGTA 10910805 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| |||||||| || ||||| || | || || ||| || || Sbjct 18435124 ATGCAGATCTTCGTAAAAACACTCACGGGGAAGACCATTACGCTTGAGGTTGAGCCCTCC 18435183 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | |||||||| ||||| ||||| || ||| | ||||| Sbjct 18435184 GACACAATCGAAAATGTCAAGGCAAAAATCCAGGACAAGGAGGGGATCCCCCCAGACCAG 18435243 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| || |||| || || || || || || Sbjct 18435244 CAGCGACTGATTTTTGCTGGAAAGCAACTCGA 18435275 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || |||||||| ||||||||||| |||| || ||| || || Sbjct 18434194 ATGCAGATCTTCGTAAAGACACTCACGGGGAAAACCATCACGCTCGAGGTTGAGCCCTCC 18434253 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||| | ||||| ||||| || || | ||||| Sbjct 18434254 GACACTATCGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAG 18434313 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| | |||| || || ||||| || || Sbjct 18434314 CAGCGATTAATTTTTGCTGGAAAACAACTTGA 18434345 >seq9 Length=5511598 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| ||||||||||| |||||||| | || |||||| | Sbjct 2315935 AAGATGCAAATCTTCGTGAAAACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGCCT 2315876 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | || | |||||||| ||||| || ||||| ||| | || Sbjct 2315875 AGTGACACGATCGAGAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGAT 2315816 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || || || ||||| || || | | | || | | ||| || Sbjct 2315815 CAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACGTTGAGCGATTAT 2315756 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| || | || || ||| | || || || | ||||| || Sbjct 2315755 AACATCCAAAAAGAGTCCACCCTTCATCTCGTCCTCCGCCTCAGAGGGGG 2315706 >seq2 Length=19542282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| || || ||| || | Sbjct 11828066 ATGCAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACCCAAGAAGTGGAGCCCTCT 11828125 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | |||||||| ||| |||||||| ||| | ||||| Sbjct 11828126 GACACCATCGAGAATGTCAAGGCAAAAATCCAACACAGGGAGGGAATCCCCCCAGACCAG 11828185 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||| || | || || || ||||| || || | ||| || | | ||| |||||| Sbjct 11828186 CAGATGCTTATATTTGCCGGTAAGCAGCTCGAGGATGGGCGAACGTTAACCGAATACAAC 11828245 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||| | || || || | || ||||| Sbjct 11828246 ATCCAAAGGGAGTCAACCCTCAATCTCGTCCTGCG 11828280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171787150080