Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 143 6e-29 seq2 132 1e-25 seq1 98.7 2e-15 seq3 86.0 1e-11 >seq9 Length=5511598 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || || ||||| |||||||||||||| || || |||||| | || Sbjct 2315711 TCTGAGGCGGAGGACGAGATGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTCAACGT 2315770 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| ||||||||||| || || |||||||| | || || ||||| || || || Sbjct 2315771 CCTCCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCC 2315830 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || |||||| |||||| ||||| || ||||| | || || ||||| Sbjct 2315831 TTCCTTGTCCTGGATTTTTGCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCAAG 2315890 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||||| ||||| | |||||| Sbjct 2315891 AGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAGATTTGCAT 2315932 >seq2 Length=19542282 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || | || || ||||| |||| || ||||| |||| | |||| | Sbjct 11828283 AGTCGCAGGACGAGATTGAGGGTTGACTCCCTTTGGATGTTGTATTCGGTTAACGTTCGC 11828224 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| |||||||||||||| || || ||||| || |||||||| || || || || Sbjct 11828223 CCATCCTCGAGCTGCTTACCGGCAAATATAAGCATCTGCTGGTCTGGGGGGATTCCCTCC 11828164 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||| ||| |||||| |||||| ||||| |||||||| || |||||||| |||| Sbjct 11828163 CTGTGTTGGATTTTTGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACTTCTTGGGTG 11828104 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || ||||| | ||||| Sbjct 11828103 ATGGTCTTGCCAGTCAATGTCTTGACGAAGATCTGCAT 11828066 >seq1 Length=28534321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| ||||| || || || || ||||| || |||||||| || || || || ||||| Sbjct 18435275 TCGAGTTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC 18435216 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || |||||| |||||| || || || ||||| || || || ||||| |||| ||| Sbjct 18435215 TGGATTTTTGCCTTGACATTTTCGATTGTGTCGGAGGGCTCAACCTCAAGCGTAATGGTC 18435156 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||||||||||| | ||||| Sbjct 18435155 TTCCCCGTGAGTGTTTTTACGAAGATCTGCAT 18435124 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||||| || || || || || || ||||| || |||||||| || || || || ||||| Sbjct 18434970 TCGAGTTGTTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 18434911 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| |||||| || ||||||||||| ||| || ||||| || |||| ||| Sbjct 18434910 TGGATTTTCGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACTTCGAGAGTAATGGTC 18434851 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || | || || || || | |||||| Sbjct 18434850 TTCCCCGTGAGTGTCTTAACAAAAATCTGCATT 18434818 >seq3 Length=15527869 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| |||||||| | ||| || || |||||||| | || ||||| || ||||| Sbjct 13620969 TTTTGAATGTTGTAATCAGAAAGTGTCCTACCATCTTCCAATTGTTTACCGGCAAAGATC 13620910 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| || |||||||||||||| ||| Sbjct 13620909 AGTCGCTGCTGGTCTGGAGGAATCCCT 13620883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479297132254