Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 149 7e-31 >seq1 Length=28534321 Score = 149 bits (164), Expect = 7e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || ||||| || ||||||||||||| ||||| ||||| || || || ||||| |||||| Sbjct 10911203 AACGTTAATCCCGGCATCAGTCCTCGCTTTTTCAACCAAAAGATGGACGCAAAAGATCCA 10911262 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| ||||| ||||| || |||||||| || || | | || || ||| ||||| Sbjct 10911263 GAAAAAAATATTCCTTCGACAGCTGCAAATGCGACGACACGCTCAGCAAAACCAGCATTT 10911322 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | |||| ||||||| | |||||||| ||||||||||| ||||| ||||||||||| Sbjct 10911323 TCATTAGCAATCCATGCTAACGCCCAATCTGCCTTCTTTTTCACACACGGCATTGTCTCA 10911382 Query 19192 ATAGAATTAAATAGA 19206 || | || || ||| Sbjct 10911383 ATGGCGTTGAAAAGA 10911397 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| ||||||| |||||| || || || ||||| ||||||||||| | ||||| Sbjct 10911519 TACATTTCCGAATGAACATTTTCCATTGCTATTTGAAACCCGTAAAAACAACGAGCTTCC 10911578 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 || | ||| ||||| | | ||| | ||| | || |||||| || || ||||| ||| Sbjct 10911579 GTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGATTTTCGTTCACAATTCCGTCAGAT 10911638 Query 19375 GCTGCAAAAAATGCTAATACATG 19397 ||||| |||||||||| |||||| Sbjct 10911639 GCTGCGAAAAATGCTAGTACATG 10911661 Score = 104 bits (114), Expect = 3e-17 Identities = 98/124 (79%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 || |||| || ||| || |||||||||||||| |||||||||| ||||| ||||| || Sbjct 10911803 ATAATTATTACCTTG-GACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTT 10911861 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATT 19556 ||||||||| |||| | |||| ||||||| || ||||| || ||||| | || ||| Sbjct 10911862 TTTATACATCCTCCACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATT 10911921 Query 19557 TTCT 19560 |||| Sbjct 10911922 TTCT 10911925 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 |||||||||| | | ||||||||| | || || || || | ||| ||||| ||| Sbjct 10910656 TTAAAAATCAGCGTTCAAAGAAAATGCGTTTTCATCCTTGGTCGACATCACTCCAGCTTT 10910715 Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||| || |||| |||| || |||||||||||||| || || | || || || Sbjct 10910716 CTGATACTCACCAACCTTTTTCTCGAAGAAATTAGTTTTGCCTTCGAGGGAGATGTGCTC 10910775 Query 18732 CATAAAATCAAATGGATTTT 18751 ||| ||||| |||||||||| Sbjct 10910776 CATGAAATCGAATGGATTTT 10910795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107661729680