Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 194 1e-43 seq9 181 9e-40 seq8 167 2e-35 seq21 158 1e-32 seq1 87.8 1e-11 >seq4 Length=12914944 Score = 194 bits (214), Expect = 1e-43 Identities = 378/551 (69%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || || || ||||| || || |||||||| ||||| ||||| || Sbjct 12611496 AGCCATCGGAATCGACTTGGGTACCACGTACTCCTGCGTTGGTGTCTGGCAGAATGGAAA 12611555 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||| || || ||||| || || || ||||| || || || || || || | |||| Sbjct 12611556 AGTTGAGATCATCGCCAACGACCAGGGGAACAGGACGACGCCCTCATACGTCGCCTTCAA 12611615 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| | || || || || || ||| |||||| | | | | | || || || Sbjct 12611616 CGACACGGAACGACTGGTCGGAGACGCTGCCAAAAATCAAGTCGC-GATGAACCCACAAA 12611674 Query 550171 -TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 ||| ||||| || || |||||| | || ||||||| ||| | || || | || | Sbjct 12611675 ATACCATTTTCGACGCGAAACGTCTCATCGGAAGAAAATTTGACGACCAGAACGCCCAAG 12611734 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 | || |||||||||||||| ||| || | || || || || || | |||| | Sbjct 12611735 CGGACATGAAGCATTGGCCATTCAAAGTGGTCAACAGCGGGGGCAAGCCGCAGTTTGAGG 12611794 Query 550290 CT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | ||| | ||| || || | || || ||| | || || |||||| | Sbjct 12611795 TGGAATTCAAGGGGGAGATG--AAGCGCTTCATGCCGGAAGAGATCAGTTCCATGGTTCT 12611852 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAA 550406 | ||| ||||| | || || |||| | |||| | |||| | || || || || Sbjct 12611853 CACGAAGATGAAGGAGACGGCGGAAGCTTATCTTGGG-ACGAAGGTCACCGACGCTGTCG 12611911 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| ||||| |||||||| ||||| ||||||||||| || |||||||| ||| | Sbjct 12611912 TCACTGTTCCAGCCTATTTTAACGACTCGCAACGTCAAGCCACAAAAGATGCCGGAGTCA 12611971 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| ||| | || || ||||| ||||| ||||||||||| ||||| || | || |||| Sbjct 12611972 TTGCGGGATTGAACGTGCTTCGAATTATTAATGAACCTACGGCTGCCGCGTTGGCGTATG 12612031 Query 550527 GACTTGATAAA 550537 | | |||||| Sbjct 12612032 GCTTGGATAAA 12612042 >seq9 Length=5511598 Score = 181 bits (200), Expect = 9e-40 Identities = 376/553 (68%), Gaps = 14/553 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || | || ||||| || || |||||||| ||||| ||||| || Sbjct 1475427 AGCCATCGGAATCGACCTGGGTACCACCTACTCCTGCGTTGGTGTCTGGCAGAATGGAAA 1475486 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 |||||| || || ||||| || || || ||||| || || || || || || | |||| Sbjct 1475487 AGTTGAGATCATCGCCAACGACCAGGGGAACAGGACGACGCCTTCGTACGTCGCCTTCAA 1475546 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| | || || || || || ||| |||||| | | || || || Sbjct 1475547 CGATACAGAACGACTTGTCGGAGACGCTGCCAAAAATCAAGTCGCCATGAACCCACAAAA 1475606 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || || ||||| || |||||| | |||||||||| ||| | || || || || || Sbjct 1475607 CACCATCTTTGACGCGAAACGTCTCATTGGAAGAAAATTTGACGACCAGAATGCCCAAGC 1475666 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG- 550289 ||| ||||| |||||||| ||| || | || || || ||||| | | |||| Sbjct 1475667 AGACATGAAACATTGGCCATTCAAAGTAGTCAACTGCGGAGGCAAACCACAATTCGAAGT 1475726 Query 550290 CTACTCATGAAGGATCTGTTAAACAATT---TTCA--CCAGAACAAATTTCATCTATGGT 550344 | | | | |||| | |||| | |||| || ||| |||| || ||||| Sbjct 1475727 CGAAT--TCAAGG----GAGAAACGAAGCGATTCATGCCGGAAGAAATCAGTTCCATGGT 1475780 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAG 550403 | | | || ||||| | || || |||| | |||| | |||| | || || || | Sbjct 1475781 TCTCACCAAGATGAAGGAGACGGCGGAAGCTTATCTTGGG-ACGAAGGTCACCGACGCGG 1475839 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | | ||||| ||||| ||||| || ||||| ||||| ||||| || |||||||| || Sbjct 1475840 TTGTCACTGTGCCAGCCTATTTCAACGACTCGCAACGCCAAGCCACCAAAGATGCCGGGG 1475899 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||||| ||| | ||||| ||||| ||||| ||||||||||| || || || | || | Sbjct 1475900 TCATTGCGGGATTAAATGTGCTTCGAATTATTAATGAACCTACGGCAGCCGCGTTGGCGT 1475959 Query 550524 ATGGACTTGATAA 550536 ||||| | ||||| Sbjct 1475960 ATGGATTGGATAA 1475972 Score = 104 bits (114), Expect = 2e-16 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCT-AGA 563310 ||||| ||||| || ||||||||||| ||| | ||||| || || ||||| ||| | Sbjct 2315712 CTGAGGCGGAGGACGAGATGAAGGGTGGACTCTTTTTGG--ATGTTATAATC-GCTCAAC 2315768 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || || ||| || || || ||||||||||| ||||| || |||||||| || || ||| Sbjct 2315769 GTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATT 2315828 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || || || |||||| || || ||| || || ||| | | || Sbjct 2315829 CCTTCCTTGTCCTGGATTTTTGCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCA 2315888 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || || || || ||||| ||||| |||||||| Sbjct 2315889 AGAGTGATGGTCTTGCCCGTGAGGGTTTTCACGAAGATTTGCAT 2315932 >seq8 Length=6519406 Score = 167 bits (184), Expect = 2e-35 Identities = 368/549 (67%), Gaps = 6/549 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || | || ||||| || || |||||||| ||||| ||||| || Sbjct 5626177 AGCCATCGGAATCGACCTGGGTACCACCTACTCCTGCGTTGGTGTCTGGCAGAATGGAAA 5626236 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || ||||| || || || ||||| || || || || || || | |||| Sbjct 5626237 AGTTGAAATCATCGCCAACGACCAGGGGAACAGGACGACCCCCTCGTACGTCGCCTTCAA 5626296 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| | || || || || || ||| |||||| | | ||||| || Sbjct 5626297 CGATACGGAACGACTGGTCGGAGACGCTGCCAAAAATCAAGTCGCCATGAATCCACAAAA 5626356 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || || ||||| || |||||| | |||||||||| ||| | || || | || || Sbjct 5626357 CACCATCTTTGACGCGAAACGTCTCATTGGAAGAAAATTTGACGACCAGAACGCCCAAGC 5626416 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || ||||| |||||||| ||| || | || || || ||||| | ||| || Sbjct 5626417 CGACATGAAACATTGGCCATTCAAAGTGGTCAACTGCGGAGGCAAACCACA-ATTCGAGG 5626475 Query 550291 T---ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | ||| | ||| || | ||| || ||| |||| || |||||| | Sbjct 5626476 TGGAATTCA--AGGGAGAAACGAAGCGATTCATGCCGGAAGAAATCAGCTCCATGGTTCT 5626533 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||||| | || || || | |||| | | || || || || || | Sbjct 5626534 CACCAAGATGAAGGAGACGGCGGAAGCGTACCTTGGAACAAAGGTGACCGACGCGGTCGT 5626593 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| ||||| ||||| || ||||| ||||| ||||| || |||||||| || || Sbjct 5626594 CACTGTGCCAGCCTATTTCAACGACTCGCAACGCCAAGCCACCAAAGATGCCGGGGCCAT 5626653 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| ||| | || || ||||| ||||| ||||||||||| ||||| || | || ||||| Sbjct 5626654 TGCGGGATTGAACGTGCTTCGAATTATTAATGAACCTACGGCTGCCGCGTTGGCGTATGG 5626713 Query 550528 ACTTGATAA 550536 | | || || Sbjct 5626714 ATTGGACAA 5626722 >seq21 Length=2726164 Score = 158 bits (174), Expect = 1e-32 Identities = 467/709 (66%), Gaps = 26/709 (4%) Strand=Plus/Minus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTC-ATCTGGTA 551952 ||||||||||||||| |||||||||||||||| ||||| ||| |||| || | || || Sbjct 2323043 AGCTCTTCGTCGTCTTCGAACTGCTTGCGAAAGGGCCAAGCGAACTCTCTCCAGCTC-TA 2322985 Query 551953 CTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTT 552012 | || || | || ||| | || || | ||||| |||||||| | | | ||| | ||| Sbjct 2322984 CCCAGGCCTCGATCGAAATCGACTCTCTCTTTGACGGAATTGACTTTTACACGTCCATTA 2322925 Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 | |||| || || || | | ||||||| || | ||| | ||||| || | Sbjct 2322924 CCCGGGCTCGTTTCGAGGAGCTGAATGCTGATCTTTTCCGTGGAACTTTGGAACCTGTTG 2322865 Query 552073 AACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTG 552132 | || | | |||| | ||||| || || || | | || || ||||| | || | Sbjct 2322864 AGAAATCTCTCCGAGACGCCAAGATGGACAAGTCTCAGATTCACGACATTGTCTTGGTCG 2322805 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC----TTATTTCAATGGT 552188 ||||||| || | || || || | | ||| ||| ||| || ||||| || Sbjct 2322804 GTGGATCCACTCGTATCCCCAAGGTGC---AAAAGTTGC-TTCAAGATTTCTTCAACGGA 2322749 Query 552189 AAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTC 552246 || | || || |||| | ||||| |||||||||||||| || || || || ||| Sbjct 2322748 AAGGAGTTGAAC--AAGTCGATCAATCCGGATGAGGCTGTTGCGTACGGAGCTGCTGTTC 2322691 Query 552247 AAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTG-TAGAT 552305 |||| || |||||| ||| | | |||| | | ||| || ||| ||| | || Sbjct 2322690 AAGCCGCCATTCTTCACGGAGATAAGTCTGAAGAGGTTCAAGAT-TTGCTTTTGCTCGAC 2322632 Query 552306 GTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGAT 552365 || |||||||| | | || | || || | |||||| ||||||| | | | ||| | Sbjct 2322631 GTCACTCCTCTCAGTTTAGGAATTGAGACTGCCGGAGGTGTTATGACGACTTTGATCAAG 2322572 Query 552366 AGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425 ||||||| || ||||| || | ||| || | || || || ||||| ||| Sbjct 2322571 CGAAATACCACCATTCCAACCAAGCAGACTCAGACTTTCACCACCTACTCTGATAACCAA 2322512 Query 552426 ACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAA 552485 | | ||| || ||| | | ||||| || || | || || || || ||| Sbjct 2322511 CCAGGTGTGTTGATCCAAGTCTACGAAGGTGAGCGAGCCATGACAAAGGACAA----CAA 2322456 Query 552486 CTTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 |||| | | || || | | || || || ||||| || |||||||| || |||| Sbjct 2322455 CTTGTTGGGCAAGTTCGAACTGACT-GGAATCCCACCTGCACCACGTGGAGTTCCCCAAA 2322397 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | || || ||||||||||| |||||||| || |||||||| |||||||| Sbjct 2322396 TCGAGGTCACTTTCGATATTGATGCCAACGGTATTTTGAACGTGACTGC 2322348 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || ||||| || | ||||| || || || ||||| || || ||||||||||| || Sbjct 2323509 GTCACCGATGCTGTCGTCACTGTCCCTGCTTACTTTAACGATTCTCAACGTCAAGCGACG 2323450 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| |||||||||| | || || | || |||||||| || || || || Sbjct 2323449 AAAGATGCTGGGACTATTGCTGGATTGAACGTATTACGAATTATCAACGAGCCCACCGCC 2323390 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| || || Sbjct 2323389 GCTGCTATTGCTTACGG 2323373 >seq1 Length=28534321 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 |||||||||||||| |||||||| ||||| ||||| || || ||||| || || || || Sbjct 18433722 TCAAGTTGTTTTCCAGCAAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCC 18433663 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 || ||||| || || ||||| || |||| | ||||| |||| || Sbjct 18433662 TGGATTTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCGACCTCGAGGGTAATGGTC 18433603 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||||| || || ||||||||||| |||||| Sbjct 18433602 TTCCCAGTGAGTGTCTTAACGAAAATCTGCATA 18433570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029287432709380