Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=28534321 Score = 123 bits (136), Expect = 3e-23 Identities = 163/223 (73%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| | | |||||| ||||| || || | ||| ||||| || || |||||||| Sbjct 10911176 TCATCACGAGAAATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTC 10911235 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | |||||| |||| ||||||||||||||||| || || ||||| || ||||||||||| Sbjct 10911236 AACCAAAAGATGGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCG 10911295 Query 39761 ACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCT-GTGCCCAATCAGC 39816 || | | ||| | ||| | | |||||| ||||| | || |||||||| || Sbjct 10911296 ACGACACGCTCAGCAAAACCAGCATTTTCATTAGCAATCCA-TGCTAACGCCCAATCTGC 10911354 Query 39817 TTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 ||||| || ||||| |||||||| || || || || || ||| Sbjct 10911355 CTTCTTTTTCACACACGGCATTGTCTCAATGGCGTTGAAAAGA 10911397 Score = 107 bits (118), Expect = 3e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || || | |||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 10911815 TTGGACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTTTTTATACATCCTC 10911874 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 || | |||| ||||||| |||||||| || ||||| | ||||||||| Sbjct 10911875 CACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATTTT 10911923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTT--GT-GACATAACTCCCATTT 39326 ||||||| ||| | | |||||||| || || || | || ||||| ||||| || Sbjct 10910655 TTTAAAAATCAGCGTTCAAAGAAAATGCGTTTTCATCCTTGGTCGACATCACTCCAGCTT 10910714 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || |||||||| ||||||||| ||||||||||||||||| | || || | | Sbjct 10910715 TCTGATACTCACCAACCTTTTTCTCGAAGAAATTAGTTTTGCCTTCGAGGGAGATGTGCT 10910774 Query 39387 CCATGAAATCAAACGGATT 39405 |||||||||| || ||||| Sbjct 10910775 CCATGAAATCGAATGGATT 10910793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/192 (70%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 ||||||||| ||||| | ||||| || || || ||||| ||||||||||| | ||||| Sbjct 10911518 ATACATTTCCGAATGAACATTTTCCATTGCTATTTGAAACCCGTAAAAACAACGAGCTTC 10911577 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 || | || || || | ||| | ||| || |||||| ||||| ||||| ||| Sbjct 10911578 CGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGATTTTCGTTCACAATTCCGTCAGA 10911637 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-- 40084 || || |||||||| | |||||| ||| || | | | || || ||| | | ||| Sbjct 10911638 TGCTGCGAAAAATGCTAGTACATGAGAAATGAATTCTCTCTCTTCAGGTTTAAGCTTAAA 10911697 Query 40085 -TTCCAGTCATT 40095 | ||||||||| Sbjct 10911698 GTCCCAGTCATT 10911709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907409009680