Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12]
162 sequences; 221,702,752 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 3e-23
>seq1
Length=28534321
Score = 123 bits (136), Expect = 3e-23
Identities = 163/223 (73%), Gaps = 5/223 (2%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
||||| | | |||||| ||||| || || | ||| ||||| || || ||||||||
Sbjct 10911176 TCATCACGAGAAATTAACTCGTTGCTGAACGTTAATCCCGGCATCAGTCCTCGCTTTTTC 10911235
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
| |||||| |||| ||||||||||||||||| || || ||||| || |||||||||||
Sbjct 10911236 AACCAAAAGATGGACGCAAAAGATCCAGAAAAAAATATTCCTTCGACAGCTGCAAATGCG 10911295
Query 39761 ACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCT-GTGCCCAATCAGC 39816
|| | | ||| | ||| | | |||||| ||||| | || |||||||| ||
Sbjct 10911296 ACGACACGCTCAGCAAAACCAGCATTTTCATTAGCAATCCA-TGCTAACGCCCAATCTGC 10911354
Query 39817 TTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859
||||| || ||||| |||||||| || || || || || |||
Sbjct 10911355 CTTCTTTTTCACACACGGCATTGTCTCAATGGCGTTGAAAAGA 10911397
Score = 107 bits (118), Expect = 3e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162
|| || | |||||||||||| ||||||||||| || || ||||||||||| ||||| ||
Sbjct 10911815 TTGGACAAATCTACTTCTTCTGCTGTCCAAAATGAAGCTTCTGCCTTTTTATACATCCTC 10911874
Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211
|| | |||| ||||||| |||||||| || ||||| | |||||||||
Sbjct 10911875 CACAAATCATGATATTGAATTGGAAACATGACAAAACGTCTTGGATTTT 10911923
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/139 (75%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTT--GT-GACATAACTCCCATTT 39326
||||||| ||| | | |||||||| || || || | || ||||| ||||| ||
Sbjct 10910655 TTTAAAAATCAGCGTTCAAAGAAAATGCGTTTTCATCCTTGGTCGACATCACTCCAGCTT 10910714
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || |||||||| ||||||||| ||||||||||||||||| | || || | |
Sbjct 10910715 TCTGATACTCACCAACCTTTTTCTCGAAGAAATTAGTTTTGCCTTCGAGGGAGATGTGCT 10910774
Query 39387 CCATGAAATCAAACGGATT 39405
|||||||||| || |||||
Sbjct 10910775 CCATGAAATCGAATGGATT 10910793
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/192 (70%), Gaps = 3/192 (2%)
Strand=Plus/Plus
Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966
||||||||| ||||| | ||||| || || || ||||| ||||||||||| | |||||
Sbjct 10911518 ATACATTTCCGAATGAACATTTTCCATTGCTATTTGAAACCCGTAAAAACAACGAGCTTC 10911577
Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026
|| | || || || | ||| | ||| || |||||| ||||| ||||| |||
Sbjct 10911578 CGTCACCTGCACTTCCTTGCTAAACCGTTCTAACAGATTTTCGTTCACAATTCCGTCAGA 10911637
Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-- 40084
|| || |||||||| | |||||| ||| || | | | || || ||| | | |||
Sbjct 10911638 TGCTGCGAAAAATGCTAGTACATGAGAAATGAATTCTCTCTCTTCAGGTTTAAGCTTAAA 10911697
Query 40085 -TTCCAGTCATT 40095
| |||||||||
Sbjct 10911698 GTCCCAGTCATT 10911709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686907409009680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |