Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 134 3e-26 seq2 125 1e-23 seq9 123 5e-23 seq7 86.0 1e-11 seq5 86.0 1e-11 >seq1 Length=28534321 Score = 134 bits (148), Expect = 3e-26 Identities = 122/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| ||||||||||| ||||| |||| || || ||||| ||||| |||||||||| Sbjct 18435899 CCTCAAGTTGTTTCCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGAATCCCCTCCTTGT 18435840 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || || | || || ||||| |||| || |||||||| ||||| | Sbjct 18435839 CCTGGATTTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCAACTTCGAGCGTGATGG 18435780 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| |||||||||||||| || || |||||||| Sbjct 18435779 TCTTCCCCGTCAAAGTCTTTACAAAAATCTGCAT 18435746 Score = 125 bits (138), Expect = 1e-23 Identities = 120/154 (78%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| |||||||| || ||||| || || || || ||||| ||||| |||||||||| Sbjct 18434035 CCTCAAGTTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGAATCCCCTCCTTGT 18433976 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || ||| | || || ||||| |||| || |||||||| ||||| | Sbjct 18433975 CCTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGAAGGCTCAACTTCGAGCGTGATGG 18433916 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| | ||||| ||||| |||||||| Sbjct 18433915 TCTTTCCCGTGAGTGTCTTTACGAAGATCTGCAT 18433882 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| |||||||| || ||||| |||| || || ||||| || || |||||||||| Sbjct 18434972 CCTCGAGTTGTTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATCCCCTCCTTGT 18434913 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || || | || || ||||| |||| |||||||||||||| || | Sbjct 18434912 CCTGGATTTTCGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACTTCGAGAGTAATGG 18434853 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| ||||| | |||||||| || ||||||||| Sbjct 18434852 TCTTCCCCGTGAGTGTCTTAACAAAAATCTGCATT 18434818 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| |||||||| || ||||| |||| ||||| ||||| || || |||||||||| Sbjct 18434659 CCTCGAGTTGTTTTCCTGCAAAAATCAGCCGTTGCTGGTCTGGTGGGATCCCCTCCTTGT 18434600 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || || | ||||| ||||| |||| || || ||||| ||||| | Sbjct 18434599 CCTGGATTTTCGCCTTGACATTTTCGATTGTGTCGGAAGGCTCAACCTCGAGCGTGATGG 18434540 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| | ||||| ||||| |||||||| Sbjct 18434539 TCTTCCCCGTGAGTGTCTTGACGAAGATCTGCAT 18434506 Score = 111 bits (122), Expect = 3e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| |||||||| || ||||| |||| | || ||||| ||||| |||||||||| Sbjct 18433724 CCTCAAGTTGTTTTCCAGCAAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCCTCCTTGT 18433665 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| || || || || | || || ||||| |||| ||||| ||||| || || | Sbjct 18433664 CCTGGATTTTCGCCTTGACATTTTCAATCGTGTCAGAAGGCTCGACCTCGAGGGTAATGG 18433605 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || || | ||||||||||| |||||||| Sbjct 18433604 TCTTCCCAGTGAGTGTCTTAACGAAAATCTGCAT 18433571 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| |||||||| || ||||| || || || || ||||| || || |||||||||| Sbjct 18434347 CCTCAAGTTGTTTTCCAGCAAAAATTAATCGCTGCTGGTCTGGTGGGATCCCCTCCTTGT 18434288 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | || || || || || || | ||||||||||| || | || || ||||| ||||| | Sbjct 18434287 CCTGAATTTTAGCCTTGACATTTTCGATAGTGTCGGAGGGCTCAACCTCGAGCGTGATGG 18434228 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| | ||||| ||||| |||||||| Sbjct 18434227 TTTTCCCCGTGAGTGTCTTTACGAAGATCTGCAT 18434194 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| ||||| || || ||||| |||| || || ||||| || || |||||||||| Sbjct 18435587 CCTCGAGTTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGGATCCCCTCCTTGT 18435528 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | || || || || || ||| | ||||| || || || | ||||||||||| || || | Sbjct 18435527 CCTGAATTTTGGCCTTGACGTTTTCGATTGTATCAGAGGGCTCGACTTCGAGGGTAATAG 18435468 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||| | ||||| ||||| || ||||| Sbjct 18435467 TCTTACCCGTGAGTGTCTTTACGAAGATTTGCAT 18435434 Score = 98.7 bits (108), Expect = 2e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282946 CCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGT 283005 |||| ||||| || || ||||| |||| || || ||||| || || |||||||||| Sbjct 18435277 CCTCGAGTTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCTGGGGGGATCCCCTCCTTGT 18435218 Query 283006 CTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCG 283065 | ||||| ||||| || || | ||||| ||||| || | || || || || || || | Sbjct 18435217 CCTGGATTTTTGCCTTGACATTTTCGATTGTGTCGGAGGGCTCAACCTCAAGCGTAATGG 18435158 Query 283066 TCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| | || || ||||| |||||||| Sbjct 18435157 TCTTCCCCGTGAGTGTTTTTACGAAGATCTGCAT 18435124 >seq2 Length=19542282 Score = 125 bits (138), Expect = 1e-23 Identities = 142/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 282913 TTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCA 282972 ||||||||||||| || | | ||| || |||||||| || || || |||||||| || | Sbjct 11828252 TTTGGATGTTGTATTCGGTTAACGTTCGCCCATCCTCGAGCTGCTTACCGGCAAATAT-A 11828194 Query 282973 AACGT-TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | | | || ||||| || || |||||| ||| |||||| ||||| || || | ||| Sbjct 11828193 AGCATCTGCTGGTCTGGGGGGATTCCCTCCCTGTGTTGGATTTTTGCCTTGACATTCTCG 11828134 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||| || | || ||||| | ||||| ||||| || ||||| ||||| ||||| Sbjct 11828133 ATGGTGTCAGAGGGCTCCACTTCTTGGGTGATGGTCTTGCCAGTCAATGTCTTGACGAAG 11828074 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 11828073 ATCTGCAT 11828066 >seq9 Length=5511598 Score = 123 bits (136), Expect = 5e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| || || ||||| | ||| |||||||||||||| || || | ||| | Sbjct 2315715 AGGCGGAGGACGAGATGAAGGGTGGACTCTTTTTGGATGTTATAATCGCTCAACGTCCTC 2315774 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||||||||| | | || || || || || || ||| Sbjct 2315775 CCATCCTCGAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCC 2315834 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| ||||| ||||| || || | ||||| ||||| || ||||| || |||||| Sbjct 2315835 TTGTCCTGGATTTTTGCCTTGACATTCTCGATCGTGTCACTAGGCTCGACCTCAAGAGTG 2315894 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| | || || ||||| || ||||| |||| Sbjct 2315895 ATGGTCTTGCCCGTGAGGGTTTTCACGAAGATTTGCATCTTCA 2315937 >seq7 Length=7050299 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2415633 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2415689 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 4218337 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 4218281 >seq5 Length=10821126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3961979 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3962035 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3962754 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3962698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737027361948