Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Folsomia_20candida_20[refseq_20GCF_5F002217175.1_202017-07-12] 162 sequences; 221,702,752 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 172 1e-37 seq2 118 3e-21 seq1 111 4e-19 >seq9 Length=5511598 Score = 172 bits (190), Expect = 1e-37 Identities = 172/221 (78%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| ||||||||||| ||||| || || || ||||| || ||||| || || || Sbjct 2315929 CAAATCTTCGTGAAAACCCTCACGGGCAAGACCATCACTCTTGAGGTCGA--GCCTAGTG 2315872 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| |||||||| ||||| ||| || |||||||| ||||||||||| || || |||| Sbjct 2315871 ACACGATCGAGAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCCCCAGATCAGC 2315812 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | |||||||| |||||||| |||||||| ||||| ||||| | |||||||||| Sbjct 2315811 AGAGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGGAGGACGTTGAGCGATTATAACA 2315752 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||| || || || ||||| || | | |||||| Sbjct 2315751 TCCAAAAAGAGTCCACCCTTCATCTCGTCCTCCGCCTCAGA 2315711 >seq2 Length=19542282 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||||| || ||||| ||| ||| Sbjct 11828069 CAGATCTTCGTCAAGACATTGACTGGCAAGACCATCACCCAAGAAGTGGAGCCCTCTGAC 11828128 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||| || || ||| || |||||||| || |||||||| Sbjct 11828129 ACCATCGAGAATGTCAAGGCAAAAATCCAACACAGGGAGGGAATCCCCCCAGACCAGCAG 11828188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || |||||||| ||||| | || | |||| || ||| || Sbjct 11828189 ATGCTTATATTTGCCGGTAAGCAGCTCGAGGATGGGCGAACGTTAACCGAATACAACATC 11828248 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || ||||| || |||| || || |||| Sbjct 11828249 CAAAGGGAGTCAACCCTCAATCTCGTCCTGCGACT 11828283 >seq1 Length=28534321 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| ||||| |||||||| || ||| ||| Sbjct 18434197 CAGATCTTCGTAAAGACACTCACGGGGAAAACCATCACGCTCGAGGTTGAGCCCTCCGAC 18434256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || ||||||||||| || || ||||| || |||||||| Sbjct 18434257 ACTATCGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAG 18434316 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGA 178072 ||| | || || || |||||||| || || Sbjct 18434317 CGATTAATTTTTGCTGGAAAACAACTTGA 18434345 Score = 111 bits (122), Expect = 4e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || || |||||||| || || ||| || Sbjct 18435437 CAAATCTTCGTAAAGACACTCACGGGTAAGACTATTACCCTCGAAGTCGAGCCCTCTGAT 18435496 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| || ||||||||||| || || ||||| || |||||||| Sbjct 18435497 ACAATCGAAAACGTCAAGGCCAAAATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAG 18435556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGA 178072 ||||| || || || ||||| || ||||| Sbjct 18435557 CGACTGATTTTTGCTGGAAAGCAACTCGA 18435585 Score = 107 bits (118), Expect = 5e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| |||||||| || || ||| Sbjct 18434509 CAGATCTTCGTCAAGACACTCACGGGGAAGACCATCACGCTCGAGGTTGAGCCTTCCGAC 18434568 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || |||||||| || || ||||| || ||||||||| Sbjct 18434569 ACAATCGAAAATGTCAAGGCGAAAATCCAGGACAAGGAGGGGATCCCACCAGACCAGCAA 18434628 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGA 178072 || || || || || |||||||| ||||| Sbjct 18434629 CGGCTGATTTTTGCAGGAAAACAACTCGA 18434657 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || || ||||||||||| || || ||| Sbjct 18433574 CAGATTTTCGTTAAGACACTCACTGGGAAGACCATTACCCTCGAGGTCGAGCCTTCTGAC 18433633 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || |||||||| || || || || || |||||||| Sbjct 18433634 ACGATTGAAAATGTCAAGGCGAAAATCCAGGACAAGGAGGGGATTCCACCAGACCAGCAG 18433693 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGA 178072 |||| || || || |||||||| || || Sbjct 18433694 AGACTGATTTTTGCTGGAAAACAACTTGA 18433722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728701505428