Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 120 6e-22 seq42 89.7 1e-12 seq19 84.2 5e-11 >seq12 Length=1757667 Score = 120 bits (132), Expect = 6e-22 Identities = 315/474 (66%), Gaps = 10/474 (2%) Strand=Plus/Minus Query 281541 TTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATA 281600 || || | ||| || ||||| | ||| | ||||| ||||| ||| || || ||||| Sbjct 338937 TTATCAATGATCTCCCTGGGACTGTAATTAGGAATTTTAGTCATCCATCCAGTGCCAATG 338878 Query 281601 CCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATT 281660 ||| | ||||| |||| | | || |||||||| | || | | ||||||||| Sbjct 338877 CCATCAGCTCCATTGACCAGTACCATTGGTATAATAGGAATGTAGTAAACAGGTTCAATT 338818 Query 281661 TTATCACCATCATCATACAAATACTTCAGAAGGTTATCATC-TGTATCGACGAAAACCTG 281719 || | | ||||| ||| | |||||| || |||||| ||| | | || | Sbjct 338817 TTCTGATTGTCATCGTACTCGTGCTTCAGGAGTGCATCATCGTGT-TTGTGAAATATAAA 338759 Query 281720 TCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACC 281779 || || | || | ||||| ||||| ||||| || | ||| || ||| || ||||| Sbjct 338758 TCTCGCCAGTGGACTGAGTTTAGTGAATATATATCTGGGACTTGCCGAGTCCTTTCCACC 338699 Query 281780 CTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGAC 281839 ||| |||| || |||||||| | |||| || || || |||||||| || || Sbjct 338698 CTGGGCTCTCGTACCGAACTGACCATTGGGCATCAGAAGATTTATATTATTGCTGCCAAC 338639 Query 281840 GTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899 | ||| ||| || | || | || || || || ||| |||||||||| |||||||| Sbjct 338638 GAAATTCTGGGCTAAATTAATAATGGTAGCCATGAGTGATGCCTCACCGTGATGATAGGC 338579 Query 281900 GCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTG 281957 ||||| || ||| ||||| || || || |||||||| || | ||||| || Sbjct 338578 TGAATGTTCAGCGACAGAACCAGCCAATTGGGCGACCTTCACTTCCTTTTTGTCA--TTC 338521 Query 281958 CGTTTGAA--AGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAA 282009 | ||||| | |||||| ||||||| || |||||| || ||||||| Sbjct 338520 CTCTTGAAGCATGTGAATATA--ACTTTTCTCTGTCCAGGCTTAAATCCATCAA 338469 >seq42 Length=1056903 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 169783 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 169724 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 169723 CCCACGTTGGGC 169712 >seq19 Length=1567206 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||| | ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 972442 TTGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 972383 Query 165768 GCCCCACGATGGGC 165781 |||||||| |||| Sbjct 972382 GCCCCACGTCGGGC 972369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057809877388460