Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 5e-13 >seq112 Length=360945 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || || |||||||||| |||||| |||||| || ||||| | ||| Sbjct 302018 TTCATGTAACGAATTTTTCCAAATATCTCACGCTCTTTCCATCCTTGATCGTGAATTCCA 302077 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | || ||| | |||||| || || || ||||||||| |||| || | |||| | Sbjct 302078 CAGATTGACCACATACATCCAACATAACCATTGGGATCTCTTCCATCCATGCTGTACCTG 302137 Query 119056 TCGTTTAAGTAGATACAGACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtt 119115 || || | ||||| | | || ||| || || || ||||| || || ||| Sbjct 302138 TCATTGAGATAGATTGACCAGGCTAGGGCATCCTCTGGTGTTCGGCTCCACTCGAGAATT 302197 Query 119116 tttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGA 119172 ||||||||||||||||| | | | || || ||||| ||||| | | || |||| Sbjct 302198 TTTTTAGCCCAGTACATCCTCATGAATCCATGAATTTTTCCCTCTCTCACCAACTGA 302254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511407738827440