Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17 147 2e-30 seq37 116 4e-21 seq425 111 2e-19 >seq17 Length=1605837 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||||||| | || ||||| || | Sbjct 83178 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83119 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | ||||| ||||| || ||| | ||||| Sbjct 83118 GACACCATCGAAAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCA 83060 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||||||||| |||| ||||| ||| || ||||| Sbjct 83059 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAA 83000 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || |||| Sbjct 82999 CATCCAGAAGGAATCCACTCTTCACTTAGT 82970 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||||||| | || ||||| || | Sbjct 83535 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83476 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | ||||| ||||| || ||| | ||||| Sbjct 83475 GACACCATCGAAAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCA 83417 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || ||||||||||| |||| ||||| ||| || ||||| Sbjct 83416 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAA 83357 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || |||| Sbjct 83356 CATCCAGAAGGAATCCACTCTTCACTTAGT 83327 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||||||| | || ||||| || | Sbjct 83763 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCGTCA 83704 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||| | ||||||||||| || ||| | |||||| Sbjct 83703 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 83644 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || ||||||||||| |||| ||||| || || |||||| Sbjct 83643 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAAC 83584 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 83583 ATCCAGAAGGAGTCTACCCTCCA 83561 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| |||||||| ||||| || |||||||| ||||||||| | || || || | Sbjct 84452 GAAAAATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAGG 84393 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | | || | | | |||| |||||| ||||| | ||||| ||||| || ||| | Sbjct 84392 CTTCGGATACTATTGAGAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCA 84334 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| ||| || ||||||||||| |||| ||||| || || Sbjct 84333 GACCAGCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGAT 84274 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || |||||||||||| | || || ||| Sbjct 84273 TATAATATCCAGAAGGAGTCTACCCTTCAT 84244 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||| ||| | || ||||| || | Sbjct 83991 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 83932 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| ||||| | ||||| ||||| || ||| | ||||| Sbjct 83931 GACACTATTGAGAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCA 83873 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || ||||||||||| |||| ||||| || || ||||| Sbjct 83872 GCAGAGATTGATTTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAA 83813 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 83812 TATCCAGAAGGAGTCTACCCTTCAT 83788 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || |||||||| ||| | || ||||| || | Sbjct 84219 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 84160 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| ||||| | ||||| ||||| || ||| | |||||| Sbjct 84159 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 84100 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || || || |||| || | ||||| ||| || |||||| Sbjct 84099 CAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAAC 84040 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 84039 ATCCAGAAGGAGTCGACTCTTCAT 84016 >seq37 Length=1171872 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||||||||| || || || ||||||||||||||| | || ||||| || | Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| || || | ||||||||||| || || | ||||| Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || ||||| |||| || | | || || || ||||| Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 40869 CATCCAGAAGGA 40880 || || ||||| Sbjct 188843 TATTCAAAAGGA 188854 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||||||||| || || || || || || |||||| |||| || |||||| | Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | || || | |||||||| ||||| || | |||||| Sbjct 189180 GACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAG 189239 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || ||||| |||| || | | || || |||||||| Sbjct 189240 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAAT 189299 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| || ||| | || | || | ||||| || Sbjct 189300 ATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAGGGGTGG 189346 >seq425 Length=33725 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || ||||| |||||||||||| |||| || || || Sbjct 29924 AACATGCAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCT 29865 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | ||| |||| | ||||| | ||||| ||||| || ||| | ||| Sbjct 29864 TCCGACACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGAC 29805 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || | || |||| ||| || || ||||| || || | ||||| ||| || ||| Sbjct 29804 CAACAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTAC 29745 Query 40867 AACATCCAGAAGGA 40880 ||||| |||||||| Sbjct 29744 AACATTCAGAAGGA 29731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212489269920